Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06611 Brassica carinata HOM05D004977 ORTHO05D032129 1.6e-30 136.3 125 100.0
BolC3t13685H Brassica oleracea HOM05D004977 ORTHO05D032129 2.3e-29 132.5 124 99.2
C03p12120 Brassica napus HOM05D004977 ORTHO05D032129 8.3e-16 87.4 45 100.0
BNapus_Darmor_BZH_scaffold_38p00910 Brassica napus HOM05D004977 ORTHO05D006454 3.0e-13 79.0 45 88.9
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 3.0e-13 79.0 45 88.9
BcaB05g22754 Brassica carinata HOM05D004977 ORTHO05D006454 3.9e-13 78.6 45 88.9
AL6G32970 Arabidopsis lyrata HOM05D004977 ORTHO05D006454 6.6e-13 77.8 45 86.7
AT5G22010 Arabidopsis thaliana HOM05D004977 ORTHO05D006454 6.6e-13 77.8 45 86.7
Carub.0006s1965 Capsella rubella HOM05D004977 ORTHO05D006454 6.6e-13 77.8 45 86.7
THA.LOC104810945 Tarenaya hassleriana HOM05D004977 ORTHO05D006454 1.5e-12 76.6 45 84.4
BcaC03g13854 Brassica carinata HOM05D004977 ORTHO05D006454 1.9e-12 76.3 45 86.7
BcaC07g41303 Brassica carinata HOM05D004977 ORTHO05D006454 1.9e-12 76.3 45 86.7
C08p43100 Brassica napus HOM05D004977 ORTHO05D006454 1.9e-12 76.3 45 86.7
BolC2t07133H Brassica oleracea HOM05D004977 ORTHO05D006454 1.9e-12 76.3 45 86.7
BolC8t51866H Brassica oleracea HOM05D004977 ORTHO05D006454 1.9e-12 76.3 45 86.7
Thhalv10012587m.g Eutrema salsugineum HOM05D004977 ORTHO05D006454 3.3e-12 75.5 45 86.7
CARHR191520 Cardamine hirsuta HOM05D004977 ORTHO05D006454 4.3e-12 75.1 45 86.7
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 7.3e-12 74.3 44 84.1
Sp6g23180 Schrenkiella parvula HOM05D004977 ORTHO05D006454 1.2e-11 73.6 45 88.9
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 4.9e-08 61.6 45 62.2
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 4.9e-08 61.6 45 62.2
PGR044G2329 Punica granatum HOM05D004977 ORTHO05D006454 4.9e-08 61.6 45 71.1
CSS0048805 Camellia sinensis var. sinensis HOM05D004977 ORTHO05D006454 1.1e-07 60.5 45 60.0
Ciclev10027762m.g Citrus clementina HOM05D004977 ORTHO05D006454 1.1e-07 60.5 45 66.7
Duzib114G0826 Durio zibethinus HOM05D004977 ORTHO05D006454 1.1e-07 60.5 45 66.7
Eucgr.J00591 Eucalyptus grandis HOM05D004977 ORTHO05D006454 1.1e-07 60.5 45 66.7
Cpa.g.sc103.53 Carica papaya HOM05D004977 ORTHO05D006454 1.9e-07 59.7 45 64.4
Manes.04G055000 Manihot esculenta HOM05D004977 ORTHO05D006454 1.9e-07 59.7 44 65.9
Potri.001G213900 Populus trichocarpa HOM05D004977 ORTHO05D006454 1.9e-07 59.7 45 66.7
GSVIVG01037357001 Vitis vinifera HOM05D004977 ORTHO05D006454 1.9e-07 59.7 45 62.2
Haze_23597 Corylus avellana HOM05D004977 ORTHO05D006454 2.4e-07 59.3 45 66.7
ECA234G1388 Erigeron canadensis HOM05D004977 ORTHO05D006454 3.2e-07 58.9 45 64.4
vmacro04053 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 3.2e-07 58.9 45 57.8
vmacro14315 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 3.2e-07 58.9 45 57.8
MELO3C014528.2 Cucumis melo HOM05D004977 ORTHO05D006454 4.1e-07 58.5 45 60.0
CsaV3_6G038660 Cucumis sativus L. HOM05D004977 ORTHO05D006454 4.1e-07 58.5 45 60.0
Aqoxy1G00589 Aquilegia oxysepala HOM05D004977 ORTHO05D006454 5.4e-07 58.2 44 63.6
ClCG02G022520 Citrullus lanatus HOM05D004977 ORTHO05D006454 5.4e-07 58.2 45 60.0
Thecc.10G121800 Theobroma cacao HOM05D004977 ORTHO05D006454 7.1e-07 57.8 45 64.4
MSTRG.21010 Avicennia marina HOM05D004977 ORTHO05D006454 9.2e-07 57.4 45 64.4
CiPaw.13G126500 Carya illinoinensis HOM05D004977 ORTHO05D006454 9.2e-07 57.4 45 62.2
Dinv18862 Davidia involucrata HOM05D004977 ORTHO05D006454 9.2e-07 57.4 45 64.4
Gohir.D04G019200 Gossypium hirsutum HOM05D004977 ORTHO05D006454 9.2e-07 57.4 45 60.0
Oeu058189.1 Olea europaea HOM05D004977 ORTHO05D006454 9.2e-07 57.4 45 57.8
COL.COLO4_16322 Corchorus olitorius HOM05D004977 ORTHO05D006454 1.2e-06 57.0 45 64.4
Gohir.A05G395800 Gossypium hirsutum HOM05D004977 ORTHO05D006454 1.6e-06 56.6 45 60.0
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 1.6e-06 56.6 45 57.8
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 1.6e-06 56.6 45 57.8
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 1.6e-06 56.6 45 57.8
Atru.chr7.2568 Acer truncatum HOM05D004977 ORTHO05D006454 2.1e-06 56.2 45 60.0
Actinidia37640 Actinidia chinensis HOM05D004977 ORTHO05D006454 2.1e-06 56.2 45 53.3
QL01p019105 Quercus lobata HOM05D004977 ORTHO05D006454 2.7e-06 55.8 45 64.4
Sed0002287 Sechium edule HOM05D004977 ORTHO05D006454 2.7e-06 55.8 45 55.6
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 4.6e-06 55.1 43 62.8
arahy.Tifrunner.gnm1.ann1.78MUYP Arachis hypogaea HOM05D004977 ORTHO05D006454 6.0e-06 54.7 45 62.2
arahy.Tifrunner.gnm1.ann1.7R5ZBL Arachis hypogaea HOM05D004977 ORTHO05D006454 6.0e-06 54.7 45 62.2
MSTRG.21003 Avicennia marina HOM05D004977 ORTHO05D006454 6.0e-06 54.7 45 64.4
Prupe.8G068000 Prunus persica HOM05D004977 ORTHO05D006454 6.0e-06 54.7 45 60.0
Actinidia04910 Actinidia chinensis HOM05D004977 ORTHO05D006454 7.8e-06 54.3 45 53.3
Dinv21728 Davidia involucrata HOM05D004977 ORTHO05D006454 7.8e-06 54.3 45 57.8
Psat7g203480 Pisum sativum HOM05D004977 ORTHO05D006454 7.8e-06 54.3 46 60.9


User provided reference genes

Program Settings