Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 3.7e-157 558.5 365 100.0
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.1e-135 487.3 392 79.1
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.7e-133 479.9 380 89.7
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.3e-121 438.7 382 84.6
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.6e-120 436.8 394 74.4
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 4.2e-116 422.2 378 84.7
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 3.7e-96 355.9 388 75.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 3.7e-96 355.9 388 75.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.1e-95 354.4 388 75.8
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 3.4e-94 349.4 388 75.0
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.3e-93 347.4 388 74.5
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 8.7e-90 334.7 370 74.9
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.3e-85 320.9 390 72.8
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.1e-79 299.7 394 70.6
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.7e-75 286.6 391 68.8
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 6.1e-75 285.4 379 68.6
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 3.7e-72 276.2 393 67.2
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.8e-66 257.3 380 64.2
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.1e-65 254.6 384 62.8
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.8e-64 249.2 374 62.3
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 8.2e-64 248.4 364 63.5
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 8.2e-64 248.4 380 63.9
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.1e-63 248.1 374 62.3
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.4e-63 246.9 397 59.7
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 9.1e-63 245.0 377 59.9
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 4.5e-62 242.7 392 61.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 2.2e-61 240.4 365 62.5
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.9e-61 240.0 378 60.6
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 2.9e-61 240.0 375 60.0
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.8e-61 239.6 376 60.4
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 3.8e-61 239.6 374 60.7
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 3.8e-61 239.6 369 61.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.5e-61 238.8 382 62.3
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 8.5e-61 238.4 377 46.9
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.1e-60 238.0 376 47.1
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 4.2e-60 236.1 363 62.0
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 5.5e-60 235.7 375 60.5
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 9.4e-60 235.0 361 62.6
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 9.4e-60 235.0 371 60.4
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.2e-59 234.6 364 62.1
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.6e-59 234.2 384 60.4
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.1e-59 233.8 379 59.9
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 6.1e-59 232.3 372 59.1
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.1e-59 232.3 376 60.4
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 1.0e-58 231.5 369 60.2
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.8e-58 230.7 369 61.0
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 1.8e-58 230.7 376 60.1
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.3e-58 230.3 376 60.4
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.3e-58 230.3 376 60.4
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.3e-58 230.3 366 59.6
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.0e-58 229.6 370 61.9
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 5.2e-58 229.2 380 53.4
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.2e-57 228.0 378 58.2
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.4e-57 226.1 358 60.6
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 9.8e-57 224.9 377 59.9
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.7e-56 224.2 372 58.6
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.7e-56 224.2 387 59.2
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.8e-56 223.4 379 59.1
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 8.3e-56 221.9 364 51.9
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 8.3e-56 221.9 404 46.5
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 8.3e-56 221.9 365 60.0
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 4.1e-55 219.5 386 57.8
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.4e-55 219.2 373 59.2
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 7.0e-55 218.8 367 58.3
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.2e-54 218.0 384 58.9
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.0e-53 214.9 379 58.0
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.0e-53 214.9 379 58.0
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.0e-53 214.9 383 57.7
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.7e-53 214.2 367 59.4
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.2e-53 213.8 380 59.7
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.9e-53 213.4 354 60.2
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.9e-53 213.4 360 60.6
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 8.5e-53 211.8 360 60.0
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 8.5e-53 211.8 334 61.4
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.5e-52 211.1 347 61.4
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.5e-52 211.1 377 58.9
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 2.5e-52 210.3 365 58.6
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 2.5e-52 210.3 366 58.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 2.5e-52 210.3 361 59.6
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 5.5e-52 209.1 361 59.6
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.2e-51 208.0 382 58.9
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 8.0e-51 205.3 345 59.7
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 8.0e-51 205.3 364 59.1
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.4e-50 204.5 361 59.0
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.4e-50 204.5 369 56.6
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.0e-50 203.0 345 59.4
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 8.8e-50 201.8 365 58.6
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 4.4e-49 199.5 360 57.8
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 7.5e-49 198.7 378 49.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.8e-48 196.8 301 64.8
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 6.3e-48 195.7 385 55.3
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.1e-47 194.9 310 63.2
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 3.1e-47 193.4 366 56.3
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 4.1e-47 193.0 387 56.3
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.2e-46 191.4 343 58.3
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.7e-46 190.3 263 70.0
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 3.5e-46 189.9 356 57.9
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.3e-45 188.0 393 53.9
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.7e-45 187.6 361 60.4
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.9e-44 184.1 338 59.8
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 2.1e-43 180.6 350 60.3
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.0e-42 178.3 352 35.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.6e-41 173.7 334 49.7
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 9.8e-41 171.8 307 60.3
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.4e-39 167.9 277 59.9
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.1e-36 158.3 313 60.7
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 3.3e-36 156.8 304 61.8
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.3e-36 156.4 340 55.6
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 4.7e-35 152.9 310 58.7
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.3e-34 150.6 248 66.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.5e-33 147.9 135 71.9
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.8e-33 146.0 369 50.4
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 5.8e-33 146.0 248 64.9
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 7.5e-33 145.6 128 71.1
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 7.5e-33 145.6 302 59.6
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 8.3e-32 142.1 371 50.4
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.1e-31 141.7 110 61.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 4.1e-31 139.8 133 67.7
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 4.1e-31 139.8 298 57.7
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 5.4e-31 139.4 342 53.8
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 2.2e-24 117.5 267 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 9.2e-23 112.1 238 60.9
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.2e-22 111.7 115 62.6
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.3e-21 108.2 177 45.8
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 6.6e-21 105.9 245 57.6
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 8.6e-21 105.5 172 45.3
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.9e-20 104.4 167 41.9
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-19 101.3 134 55.2
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.9e-16 90.5 179 40.8
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 6.4e-16 89.4 236 53.0
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 2.7e-14 84.0 344 45.3
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 6.0e-14 82.8 91 53.8
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 9.6e-12 75.5 142 38.0
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-09 68.6 88 64.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.9e-08 63.9 34 76.5
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.4e-07 61.6 61 50.8
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-07 61.6 34 73.5


User provided reference genes

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