Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05332 Brassica carinata HOM05D003639 ORTHO05D004246 1.0e-38 162.9 83 100.0
BolC3t15153H Brassica oleracea HOM05D003639 ORTHO05D004246 1.0e-38 162.9 83 100.0
C03p27810 Brassica napus HOM05D003639 ORTHO05D004246 3.0e-30 134.8 69 98.6
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 3.7e-28 127.9 74 86.5
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 8.2e-28 126.7 75 89.3
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 8.2e-28 126.7 75 89.3
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 4.1e-27 124.4 74 85.1
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 9.1e-27 123.2 74 87.8
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 9.1e-27 123.2 75 86.7
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 9.1e-27 123.2 74 87.8
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 1.2e-26 122.9 77 84.4
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.2e-26 122.9 77 84.4
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.2e-26 122.9 77 84.4
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 1.2e-26 122.9 77 84.4
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 4.5e-26 120.9 76 84.2
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.2e-25 118.6 77 80.5
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 3.8e-25 117.9 75 84.0
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 6.5e-25 117.1 74 82.4
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 4.2e-24 114.4 74 77.0
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 7.2e-24 113.6 76 80.3
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 3.8e-17 91.3 72 66.7
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 6.1e-15 84.0 58 67.2
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 8.3e-12 73.6 72 50.0
COL.COLO4_13929 Corchorus olitorius HOM05D003639 ORTHO05D004246 2.4e-11 72.0 72 47.2
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.4e-11 72.0 59 55.9
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.3e-09 66.2 41 80.5
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.7e-09 65.9 53 54.7
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 3.8e-09 64.7 61 52.5
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 7.2e-08 60.5 51 58.8
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 3.6e-07 58.2 60 45.0
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 4.7e-07 57.8 51 56.9
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.0e-07 57.0 72 45.8
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.8e-06 55.8 51 54.9
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 4.0e-06 54.7 51 54.9
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 5.2e-06 54.3 39 59.0
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 5.2e-06 54.3 50 60.0
HanXRQChr17g0566661 Helianthus annuus HOM05D003639 ORTHO05D004246 8.8e-06 53.5 74 41.9
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 8.8e-06 53.5 57 47.4


User provided reference genes

Program Settings