Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05306 Brassica carinata HOM05D002899 ORTHO05D018620 3.7e-73 278.1 139 100.0
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 7.0e-48 194.1 148 71.6
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 4.6e-47 191.4 148 70.3
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 4.4e-42 174.9 145 65.5
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 4.1e-40 168.3 144 64.6
BcaC01g05295 Brassica carinata HOM05D002899 ORTHO05D018620 7.0e-40 167.5 80 100.0
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 5.4e-32 141.4 145 53.8
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 2.7e-31 139.0 141 56.0
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 2.3e-30 136.0 141 54.6
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 2.3e-30 136.0 141 54.6
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 2.3e-30 136.0 141 54.6
C03p28160 Brassica napus HOM05D002899 ORTHO05D018620 3.9e-30 135.2 61 100.0
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 6.6e-30 134.4 141 53.9
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 6.6e-30 134.4 141 53.9
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 6.6e-30 134.4 141 53.9
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 1.9e-29 132.9 137 54.0
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 1.9e-29 132.9 141 53.9
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 7.3e-29 131.0 144 52.8
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.3e-27 125.9 156 47.4
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 5.2e-27 124.8 154 46.8
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.5e-26 123.2 156 46.8
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.3e-25 120.2 149 49.0
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 2.1e-23 112.8 154 42.9
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.1e-23 112.8 154 42.9
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 3.5e-23 112.1 154 42.9
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.7e-22 109.8 147 43.5
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 2.3e-22 109.4 161 39.8
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 3.0e-22 109.0 163 40.5
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 5.1e-22 108.2 160 40.6
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 1.5e-21 106.7 163 38.7
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 1.6e-20 103.2 159 39.6
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.6e-20 103.2 148 43.2
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.1e-20 102.8 148 43.2
BolC3t15186H Brassica oleracea HOM05D002899 ORTHO05D018620 3.6e-20 102.1 79 67.1
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 3.6e-20 102.1 149 43.0
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 4.7e-20 101.7 156 41.0
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 2.4e-19 99.4 163 38.0
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.4e-19 99.4 145 40.7
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.4e-19 99.4 138 43.5
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 3.1e-19 99.0 164 39.0
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.8e-19 97.8 145 40.0
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 2.0e-18 96.3 159 39.0
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.6e-18 95.9 158 38.6
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.6e-18 95.9 148 41.2
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 2.6e-18 95.9 142 44.4
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 2.6e-18 95.9 163 38.0
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 2.6e-18 95.9 161 38.5
A06p12980 Brassica napus HOM05D002899 ORTHO05D018620 4.4e-18 95.1 112 52.7
Aqoxy6G01674 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 7.6e-18 94.4 148 40.5
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 9.9e-18 94.0 163 37.4
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 9.9e-18 94.0 161 37.9
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 9.9e-18 94.0 161 41.6
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 1.3e-17 93.6 156 38.5
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 1.3e-17 93.6 161 37.9
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 1.3e-17 93.6 153 40.5
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 1.7e-17 93.2 153 39.2
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 2.2e-17 92.8 160 37.5
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 2.2e-17 92.8 151 38.4
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 2.9e-17 92.4 161 41.0
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 2.9e-17 92.4 160 37.5
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 3.8e-17 92.0 152 40.8
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 3.8e-17 92.0 160 36.2
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 4.9e-17 91.7 157 37.6
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 4.9e-17 91.7 160 37.5
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 4.9e-17 91.7 154 39.6
TAR633G2735 Trochodendron aralioides HOM05D002899 ORTHO05D003850 4.9e-17 91.7 161 36.6
Dinv04697 Davidia involucrata HOM05D002899 ORTHO05D003850 6.4e-17 91.3 162 37.0
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 6.4e-17 91.3 158 37.3
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 6.4e-17 91.3 157 38.9
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 8.4e-17 90.9 160 36.9
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 8.4e-17 90.9 147 40.1
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 1.4e-16 90.1 146 39.7
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 1.9e-16 89.7 157 38.2
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 1.9e-16 89.7 160 35.6
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.9e-16 89.7 157 37.6
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 1.9e-16 89.7 163 35.6
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 2.4e-16 89.4 158 35.4
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 3.2e-16 89.0 162 35.8
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 4.2e-16 88.6 147 36.1
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 4.2e-16 88.6 144 41.7
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 4.2e-16 88.6 163 35.0
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 4.2e-16 88.6 141 35.5
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 5.4e-16 88.2 157 41.4
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 7.1e-16 87.8 154 39.0
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 9.3e-16 87.4 147 36.7
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.2e-15 87.0 141 38.3
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 1.2e-15 87.0 156 37.2
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 1.2e-15 87.0 161 36.6
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 1.2e-15 87.0 159 38.4
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.6e-15 86.7 143 37.8
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 1.6e-15 86.7 97 52.6
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.6e-15 86.7 163 35.0
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.6e-15 86.7 164 35.4
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 1.6e-15 86.7 150 37.3
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 2.1e-15 86.3 141 37.6
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 2.1e-15 86.3 148 37.8
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 2.7e-15 85.9 144 38.9
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 2.7e-15 85.9 159 35.8
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 2.7e-15 85.9 150 36.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 2.7e-15 85.9 150 36.0
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 2.7e-15 85.9 156 37.2
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 3.5e-15 85.5 160 35.6
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 3.5e-15 85.5 149 37.6
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 4.6e-15 85.1 153 35.9
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 4.6e-15 85.1 159 38.4
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 6.0e-15 84.7 147 36.7
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 6.0e-15 84.7 147 36.7
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 7.8e-15 84.3 137 38.7
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 7.8e-15 84.3 159 36.5
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 1.0e-14 84.0 156 33.3
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.3e-14 83.6 160 35.0
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 1.3e-14 83.6 160 35.0
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 1.7e-14 83.2 150 40.7
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 1.7e-14 83.2 154 39.0
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 1.7e-14 83.2 162 35.2
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 2.3e-14 82.8 156 34.6
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 3.0e-14 82.4 146 38.4
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 3.0e-14 82.4 153 35.3
Aqoxy1G02235 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 3.9e-14 82.0 134 39.6
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 3.9e-14 82.0 163 33.7
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 3.9e-14 82.0 156 35.9
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 3.9e-14 82.0 156 35.9
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 5.1e-14 81.6 163 32.5
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 5.1e-14 81.6 163 33.1
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 5.1e-14 81.6 163 33.1
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 8.7e-14 80.9 162 34.0
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 8.7e-14 80.9 167 34.1
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.5e-13 80.1 151 39.7
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 3.3e-13 79.0 140 35.7
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 5.6e-13 78.2 163 34.4
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 5.6e-13 78.2 139 37.4
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 5.6e-13 78.2 144 39.6
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 7.3e-13 77.8 155 33.5
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 1.3e-12 77.0 158 32.9
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.6e-12 76.6 158 34.2
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 1.6e-12 76.6 156 34.0
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 2.1e-12 76.3 133 39.1
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.8e-12 75.9 138 35.5
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 2.8e-12 75.9 158 33.5
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 3.6e-12 75.5 152 36.8
AUR62031080 Chenopodium quinoa HOM05D002899 ORTHO05D003850 4.8e-12 75.1 140 35.7
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 1.4e-11 73.6 161 35.4
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.8e-11 73.2 153 34.0
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 5.3e-11 71.6 138 34.8
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 9.0e-11 70.9 143 32.9
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 9.0e-11 70.9 170 32.9
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.2e-10 70.5 140 34.3
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.5e-10 70.1 144 36.8
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 1.5e-10 70.1 144 37.5
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.5e-10 70.1 122 39.3
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 4.4e-10 68.6 122 37.7
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 9.9e-10 67.4 208 29.8
Prupe.7G002000 Prunus persica HOM05D002899 ORTHO05D003850 9.9e-10 67.4 130 35.4
COL.COLO4_24093 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.7e-09 66.6 144 35.4
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 3.8e-09 65.5 170 33.5
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.9e-08 63.2 124 37.9
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.1e-07 59.7 118 37.3
RcHm_v2.0_Chr6g0293801 Rosa chinensis HOM05D002899 ORTHO05D003850 2.7e-07 59.3 184 27.7
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 3.5e-07 58.9 34 85.3
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 3.5e-07 58.9 34 85.3
Pp3c22_1740 Physcomitrium patens HOM05D002899 ORTHO05D018620 3.5e-07 58.9 60 50.0
FAN24G1302 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.0e-06 57.4 184 27.7
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 3.0e-06 55.8 120 36.7
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 8.7e-06 54.3 112 31.2


User provided reference genes

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