Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05144 Brassica carinata HOM05D005501 ORTHO05D007485 3.4e-49 198.0 98 100.0
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 2.5e-23 112.1 66 83.3
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 2.5e-23 112.1 66 83.3
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 9.4e-23 110.2 66 81.8
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 2.1e-22 109.0 66 81.8
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 4.7e-22 107.8 66 80.3
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 4.7e-22 107.8 66 80.3
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 8.0e-22 107.1 66 80.3
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 8.0e-22 107.1 66 80.3
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 8.0e-22 107.1 66 80.3
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 8.0e-22 107.1 66 80.3
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 2.3e-21 105.5 66 77.3
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 1.1e-20 103.2 66 77.3
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 1.1e-20 103.2 66 77.3
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 2.0e-20 102.4 66 77.3
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 2.0e-20 102.4 66 77.3
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 3.3e-20 101.7 66 77.3
C04p08020 Brassica napus HOM05D005501 ORTHO05D007485 9.7e-20 100.1 66 75.8
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 9.1e-18 93.6 66 68.2
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 2.6e-17 92.0 66 63.6
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 5.9e-17 90.9 66 65.2
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 1.3e-16 89.7 66 66.7
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 2.2e-16 89.0 66 66.7
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 2.2e-16 89.0 66 63.6
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 2.2e-16 89.0 66 66.7
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 2.9e-16 88.6 66 65.2
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 2.9e-16 88.6 66 65.2
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 2.9e-16 88.6 66 65.2
CiPaw.01G263800 Carya illinoinensis HOM05D005501 ORTHO05D007485 3.8e-16 88.2 66 62.1
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 5.0e-16 87.8 66 63.6
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 5.0e-16 87.8 66 65.2
RcHm_v2.0_Chr1g0349801 Rosa chinensis HOM05D005501 ORTHO05D007485 5.0e-16 87.8 66 66.7
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 6.5e-16 87.4 66 60.6
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.1e-15 86.7 66 63.6
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.1e-15 86.7 66 63.6
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 1.1e-15 86.7 66 63.6
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 1.1e-15 86.7 66 63.6
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 1.1e-15 86.7 66 63.6
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 1.5e-15 86.3 66 62.1
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.5e-15 86.3 66 63.6
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 1.5e-15 86.3 66 63.6
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 1.9e-15 85.9 66 63.6
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 1.9e-15 85.9 66 62.1
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 1.9e-15 85.9 66 62.1
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 1.9e-15 85.9 66 62.1
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 2.5e-15 85.5 66 63.6
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.5e-15 85.5 66 63.6
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.5e-15 85.5 66 63.6
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.5e-15 85.5 66 63.6
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.5e-15 85.5 66 63.6
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 3.2e-15 85.1 60 68.3
Psat0s3070g0040 Pisum sativum HOM05D005501 ORTHO05D007485 3.2e-15 85.1 66 62.1
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 4.2e-15 84.7 66 63.6
Sed0024444 Sechium edule HOM05D005501 ORTHO05D007485 4.2e-15 84.7 59 66.1
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 4.2e-15 84.7 66 60.6
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 5.5e-15 84.3 66 62.1
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 5.5e-15 84.3 66 60.6
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 5.5e-15 84.3 66 62.1
TAR374G0513 Trochodendron aralioides HOM05D005501 ORTHO05D007485 5.5e-15 84.3 66 63.6
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 5.5e-15 84.3 66 63.6
Ciclev10021173m.g Citrus clementina HOM05D005501 ORTHO05D007485 7.2e-15 84.0 60 63.3
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 7.2e-15 84.0 66 63.6
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 7.2e-15 84.0 66 60.6
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 9.4e-15 83.6 66 62.1
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 9.4e-15 83.6 66 60.6
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 9.4e-15 83.6 66 62.1
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 1.2e-14 83.2 59 64.4
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 1.2e-14 83.2 59 66.1
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 1.6e-14 82.8 66 59.1
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 1.6e-14 82.8 66 60.6
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 2.1e-14 82.4 66 57.6
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 2.1e-14 82.4 59 64.4
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 2.1e-14 82.4 59 64.4
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.1e-14 82.4 66 63.6
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 3.6e-14 81.6 66 60.6
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 3.6e-14 81.6 66 60.6
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 4.7e-14 81.3 59 62.7
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 6.1e-14 80.9 59 64.4
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 8.0e-14 80.5 66 62.1
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 8.0e-14 80.5 66 60.6
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 8.0e-14 80.5 66 62.1
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 8.0e-14 80.5 66 62.1
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 8.0e-14 80.5 66 62.1
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 1.0e-13 80.1 66 59.1
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 1.4e-13 79.7 66 59.1
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 1.8e-13 79.3 59 61.0
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 1.8e-13 79.3 66 59.1
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 1.8e-13 79.3 59 62.7
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 2.3e-13 79.0 67 62.7
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 2.3e-13 79.0 66 60.6
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 3.0e-13 78.6 61 60.7
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 4.0e-13 78.2 59 62.7
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 5.2e-13 77.8 66 57.6
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 6.8e-13 77.4 77 54.5
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 8.8e-13 77.0 76 55.3
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 8.8e-13 77.0 59 61.0
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 8.8e-13 77.0 68 58.8
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 1.2e-12 76.6 66 56.1
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 2.0e-12 75.9 66 56.1
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 3.4e-12 75.1 66 54.5
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 5.7e-12 74.3 60 55.0
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 7.5e-12 73.9 66 54.5
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 1.3e-11 73.2 45 73.3
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 1.3e-11 73.2 66 54.5
HPP92_000383 Vanilla planifolia HOM05D005501 ORTHO05D007485 1.1e-10 70.1 66 48.5
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 3.5e-09 65.1 69 53.6
EL10Ac2g02806 Beta vulgaris HOM05D005501 ORTHO05D014923 5.9e-09 64.3 50 56.0
RcHm_v2.0_Chr1g0349851 Rosa chinensis HOM05D005501 ORTHO05D007485 1.3e-08 63.2 39 71.8
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 2.2e-08 62.4 55 56.4
SEGI_07028 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 2.2e-08 62.4 61 50.8
Haze_16794 Corylus avellana HOM05D005501 ORTHO05D007485 6.5e-08 60.8 43 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 2.5e-07 58.9 66 45.5
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 5.5e-07 57.8 67 49.3


User provided reference genes

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