Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 2.1e-186 655.6 337 100.0
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.0e-169 598.6 333 94.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 3.5e-162 575.1 299 98.7
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 8.7e-161 570.5 304 96.7
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 9.7e-160 567.0 305 95.7
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 5.3e-158 561.2 299 95.0
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 2.4e-150 535.8 301 89.7
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 5.7e-144 514.6 301 87.0
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 9.7e-144 513.8 300 85.3
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 3.5e-141 505.4 301 85.4
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.5e-139 500.0 295 86.4
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 5.2e-137 491.5 300 82.7
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.1e-136 490.3 302 82.5
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 6.3e-135 484.6 331 77.9
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 5.9e-133 478.0 308 78.2
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 3.6e-114 415.6 320 67.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 4.7e-114 415.2 288 73.3
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.0e-113 414.1 298 71.1
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.0e-113 412.5 299 69.2
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.6e-112 409.5 300 70.3
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 4.4e-112 408.7 300 69.0
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.8e-112 407.5 295 72.2
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.2e-111 406.4 299 68.9
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 4.9e-111 405.2 304 68.1
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 6.4e-111 404.8 294 68.4
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.1e-110 404.1 294 69.0
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 4.1e-110 402.1 313 67.4
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 9.2e-110 401.0 316 64.9
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 9.2e-110 401.0 301 68.8
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.6e-109 400.2 293 70.3
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 2.0e-109 399.8 302 67.2
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.7e-109 399.4 291 68.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 7.8e-109 397.9 299 67.6
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.3e-108 397.1 288 69.8
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.7e-108 396.7 294 67.7
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 5.0e-108 395.2 300 67.0
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 8.6e-108 394.4 333 64.3
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 8.6e-108 394.4 300 68.3
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.1e-107 394.0 300 67.3
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.1e-107 394.0 300 67.3
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.9e-107 393.3 289 69.2
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.9e-107 393.3 320 65.0
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.5e-107 392.9 301 66.8
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.3e-107 392.5 318 65.4
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 5.6e-107 391.7 290 69.3
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 5.6e-107 391.7 289 68.2
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 7.3e-107 391.3 306 66.7
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 7.3e-107 391.3 301 65.8
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 7.3e-107 391.3 300 66.7
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.2e-106 390.6 322 61.8
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 1.2e-106 390.6 293 66.9
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 2.1e-106 389.8 317 64.4
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.8e-106 389.4 291 68.4
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 3.6e-106 389.0 290 69.0
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 3.6e-106 389.0 301 65.4
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 4.7e-106 388.7 289 68.9
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 8.0e-106 387.9 305 65.2
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.4e-105 387.1 311 64.3
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.4e-105 387.1 299 65.9
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.0e-105 385.6 295 68.5
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.5e-104 383.6 291 66.7
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.7e-103 380.2 303 66.3
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 2.2e-103 379.8 353 60.1
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 2.9e-103 379.4 292 65.8
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.9e-103 379.4 285 67.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 4.9e-103 378.6 295 66.4
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.4e-102 376.3 300 65.0
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 3.2e-102 375.9 290 65.5
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 2.7e-101 372.9 292 64.0
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 6.0e-101 371.7 281 67.3
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 6.0e-101 371.7 292 64.4
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 3.0e-100 369.4 293 64.2
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 5.0e-100 368.6 307 64.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.5e-99 367.1 293 63.5
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 1.6e-98 363.6 299 64.5
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 4.7e-98 362.1 298 62.8
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 6.2e-98 361.7 313 60.4
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 3.1e-97 359.4 298 62.8
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 4.0e-97 359.0 312 62.2
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 3.4e-96 355.9 293 62.8
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.4e-96 355.9 300 63.0
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 7.5e-96 354.8 285 64.2
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 1.7e-95 353.6 279 64.2
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.4e-94 350.5 316 59.2
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.4e-94 350.5 280 63.9
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 4.1e-94 349.0 293 62.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 7.1e-94 348.2 292 61.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 2.7e-93 346.3 301 63.8
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.0e-92 344.4 315 59.0
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.3e-92 344.0 312 60.3
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.3e-92 343.2 292 60.3
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.5e-91 340.5 332 55.1
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.5e-91 340.5 272 65.4
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 1.3e-87 327.4 277 60.3
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.7e-87 327.0 294 56.8
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.4e-86 323.9 337 54.3
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.2e-85 320.9 336 55.1
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 6.0e-85 318.5 312 54.2
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 6.6e-84 315.1 296 57.1
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.6e-80 303.1 308 54.5
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.9e-79 298.9 375 46.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 2.6e-72 276.6 240 63.8
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.1e-70 271.2 305 47.9
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 8.4e-63 245.0 194 65.5
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 8.4e-63 245.0 298 49.3
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 3.2e-62 243.0 221 61.1
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.8e-60 237.3 221 58.8
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 3.3e-59 233.0 303 46.2
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.1e-54 218.0 329 40.4
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 7.9e-53 211.8 149 68.5
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 7.9e-53 211.8 191 61.8
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 8.2e-50 201.8 206 53.4
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 2.9e-47 193.4 198 58.6
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 7.2e-38 162.2 86 93.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 7.2e-38 162.2 86 93.0
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.0e-35 154.1 96 78.1
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 2.4e-25 120.6 357 27.5
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.1e-25 120.2 295 31.9
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 1.3e-23 114.8 339 28.9
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.6e-21 106.7 113 57.5
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 8.0e-21 105.5 71 70.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.4e-20 104.8 91 54.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 6.7e-20 102.4 90 54.4
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.5e-14 84.7 52 76.9
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-14 84.3 58 70.7
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 2.5e-14 84.0 83 60.2
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 5.5e-14 82.8 83 59.0
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 5.5e-14 82.8 83 59.0
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 3.6e-13 80.1 80 60.0
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 3.6e-13 80.1 91 47.3
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 6.8e-12 75.9 158 30.4
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.8e-10 69.7 43 69.8
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.2e-08 65.1 64 56.2
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 4.2e-06 56.6 46 63.0


User provided reference genes

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