Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1988.4 1091 100.0
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1985.3 1091 99.9
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1963.7 1093 99.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1957.2 1093 98.6
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1952.6 1094 98.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1909.0 1098 96.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1861.7 1103 93.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1834.7 1101 92.4
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1818.1 1098 89.5
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1816.2 1098 89.4
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1799.6 1101 88.8
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1798.9 1098 88.7
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1693.7 1103 83.4
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1592.0 1103 79.4
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1440.2 1173 69.5
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1142 71.4
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1436.8 1175 68.4
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1432.2 1144 68.1
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1148 69.9
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1142 70.3
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1425.6 1174 66.8
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1424.8 1143 70.5
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1144 68.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1143 70.3
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1147 69.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1154 67.1
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1413.7 1162 66.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1411.7 1173 65.8
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1408.7 1157 66.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1406.0 1147 66.9
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1157 66.5
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1404.4 1175 67.9
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1143 68.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1401.0 1154 66.6
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1188 67.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1161 69.7
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1395.6 1166 65.8
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1395.2 1186 65.5
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1394.0 1167 68.0
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1392.9 1159 65.9
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1390.9 1173 65.6
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1390.9 1185 64.9
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1388.2 1176 67.0
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1387.1 1163 66.0
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1382.9 1171 66.8
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1382.9 1166 65.8
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1382.9 1175 67.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1382.5 1177 65.5
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1381.3 1170 67.0
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1172 67.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1374.0 1159 67.5
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1373.6 1166 66.9
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1373.2 1169 66.0
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1372.8 1166 66.9
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1371.7 1158 66.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1370.1 1207 63.6
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1369.8 1173 65.9
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1176 66.1
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1364.7 1158 67.1
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1362.1 1166 67.4
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1362.1 1166 67.4
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1360.5 1207 63.5
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1360.1 1164 66.8
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1359.7 1102 68.9
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1357.4 1150 66.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1352.0 1137 67.2
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1350.1 1198 64.2
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1349.7 1153 68.3
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1343.6 1168 65.2
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1339.3 1172 63.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1150 65.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1338.2 1176 65.7
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1334.7 1152 65.5
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1330.1 1137 65.3
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1319.7 1160 64.4
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1315.1 1192 62.7
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1313.5 1132 66.3
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1308.1 1120 66.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1307.0 1154 64.5
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1294.3 1189 62.2
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1286.2 1208 60.8
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1281.5 1128 65.1
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 1203 62.9
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1273.8 1168 61.6
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1261.1 1162 61.6
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1252.3 1167 60.1
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1152.5 956 67.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1125.2 874 70.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1077.8 1046 61.6
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.4e-305 1053.1 1216 52.1
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 4.6e-304 1048.1 1209 51.9
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 1.5e-302 1043.1 1243 49.4
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.4e-292 1009.2 1114 53.7
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.0e-290 1003.8 751 70.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 7.7e-283 977.6 935 60.2
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.7e-256 888.6 731 65.4
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.9e-245 852.0 1390 42.3
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.0e-231 805.8 590 75.8
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 3.4e-230 802.7 589 72.5
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.7e-205 720.7 518 73.4
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.9e-205 719.9 518 73.2
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 7.9e-203 711.8 500 75.0
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.6e-200 704.1 615 61.6
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 8.7e-186 655.2 627 57.9
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 5.5e-180 636.0 588 60.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 9.1e-175 618.6 1115 40.1
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.7e-161 572.8 586 56.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.2e-156 557.0 553 56.8
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.8e-143 514.6 556 53.8
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.8e-136 490.7 389 68.4
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.3e-132 476.9 461 60.7
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-123 448.7 314 74.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 3.4e-121 440.7 558 48.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.4e-111 408.7 764 35.6
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-111 408.7 312 69.6
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 5.1e-101 373.6 486 48.6
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.7e-94 351.3 553 41.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.8e-91 341.3 346 57.2
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 5.3e-90 337.0 1140 30.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.0e-85 322.8 363 51.0
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.5e-84 318.9 379 51.2
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 7.4e-84 316.6 211 78.7
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.9e-79 302.0 391 49.4
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.3e-75 289.3 261 55.2
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 5.1e-69 267.3 251 57.8
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.4e-65 254.6 147 83.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.8e-64 251.1 149 83.9
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 7.9e-62 243.4 217 61.3
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.7e-60 236.5 159 75.5
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.4e-55 222.6 241 55.2
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.4e-50 206.1 340 41.5
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.3e-50 204.1 106 94.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 5.0e-48 197.6 113 85.0
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.5e-47 196.1 196 55.6
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.4e-47 193.4 111 84.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.1e-46 192.2 346 39.3
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-46 191.8 113 83.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 6.1e-46 190.7 347 39.8
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 8.0e-46 190.3 346 38.7
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 3.9e-45 188.0 143 69.9
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 5.2e-45 187.6 113 81.4
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 7.0e-42 177.2 109 80.7
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.5e-41 174.5 106 83.0
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.6e-38 166.0 575 28.0
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-38 165.6 99 82.8
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.1e-38 165.6 183 54.1
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-38 165.2 89 89.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 6.8e-37 160.6 97 82.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 4.5e-33 147.9 82 91.5
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.0e-29 135.2 120 58.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.4e-28 131.7 127 51.2
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 3.3e-23 115.2 70 81.4
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.0e-21 110.2 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.0e-21 108.6 75 72.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 2.6e-20 105.5 85 62.4
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.7e-20 104.4 152 44.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.2e-18 98.6 91 57.1
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.6e-14 86.3 191 37.2
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 3.6e-06 58.5 55 61.8


User provided reference genes

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