Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 8.4e-246 854.0 713 100.0
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 8.4e-238 827.4 713 98.2
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.1e-234 817.0 713 97.5
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 3.6e-233 812.0 717 96.8
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 3.2e-229 798.9 712 96.6
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.1e-216 757.3 712 92.0
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.1e-173 614.4 718 84.3
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.6e-164 583.9 719 81.5
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 4.7e-164 582.4 716 80.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.4e-163 580.9 724 80.1
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 7.0e-160 568.5 717 78.9
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 7.3e-149 531.9 715 75.7
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 9.2e-144 515.0 728 74.7
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 2.5e-133 480.3 706 70.7
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.3e-110 404.8 619 73.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 4.3e-109 399.8 617 72.4
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 2.3e-102 377.5 620 71.3
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.4e-99 368.2 618 71.2
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.4e-99 367.5 619 70.9
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.0e-98 364.4 621 71.2
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.0e-98 364.4 612 70.9
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.0e-97 362.1 616 70.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.7e-97 361.3 618 70.6
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 2.9e-97 360.5 710 67.0
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 3.8e-97 360.1 618 70.7
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 3.8e-97 360.1 630 69.2
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.4e-96 358.2 705 64.3
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 9.3e-96 355.5 704 67.5
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.2e-95 355.1 710 63.2
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 3.6e-95 353.6 619 70.0
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 4.6e-95 353.2 619 70.6
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 6.1e-95 352.8 687 68.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.3e-94 351.7 617 59.6
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.3e-94 350.9 613 70.6
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 2.3e-94 350.9 694 66.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 8.7e-94 349.0 613 69.5
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.9e-93 347.8 624 68.6
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 7.4e-93 345.9 621 69.9
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 3.7e-92 343.6 624 68.3
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.1e-91 340.1 720 63.3
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 9.1e-91 339.0 618 66.7
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 2.6e-90 337.4 717 62.3
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.0e-89 335.5 716 62.3
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.1e-88 332.0 618 67.8
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.4e-88 331.6 626 68.2
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.5e-88 330.9 542 75.8
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.3e-86 324.3 574 70.2
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.5e-85 321.6 621 67.5
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 9.7e-85 318.9 617 67.6
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 9.7e-85 318.9 722 60.1
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.8e-84 317.4 707 61.2
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.8e-84 317.4 617 67.7
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.1e-83 315.5 619 66.9
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 6.9e-83 312.8 633 65.7
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 6.9e-83 312.8 621 66.2
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 2.6e-82 310.8 614 66.8
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.4e-82 310.5 609 68.0
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 3.4e-82 310.5 623 65.5
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 5.9e-82 309.7 713 60.0
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.0e-81 308.9 619 65.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.7e-79 300.8 622 65.4
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.6e-79 300.4 620 66.1
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 4.7e-79 300.1 694 63.3
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 6.1e-79 299.7 618 66.5
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.3e-78 297.7 704 61.1
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 8.8e-78 295.8 584 67.0
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.5e-77 295.0 708 60.7
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.0e-77 294.7 619 65.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 3.3e-77 293.9 616 66.9
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 3.3e-77 293.9 553 70.3
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 9.7e-77 292.4 619 66.2
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.3e-76 292.0 617 66.5
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 6.3e-76 289.7 618 66.3
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.1e-75 288.9 624 64.4
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 4.1e-75 287.0 617 64.3
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.6e-74 285.0 624 64.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 2.2e-73 281.2 698 56.9
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.2e-73 281.2 593 65.9
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 3.2e-72 277.3 412 59.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.2e-72 276.2 274 54.7
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.2e-71 275.4 703 58.3
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.4e-70 271.9 614 64.7
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.3e-70 271.2 625 62.9
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 5.2e-70 270.0 499 75.6
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.2e-70 270.0 703 59.6
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 2.8e-68 264.2 621 63.4
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 8.2e-68 262.7 297 47.1
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 9.1e-67 259.2 274 50.0
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.2e-66 258.8 614 62.7
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 5.0e-65 253.4 272 50.4
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.9e-64 251.5 681 58.4
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.5e-61 241.9 407 56.3
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 5.7e-61 240.0 356 43.3
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.0e-57 229.2 708 58.5
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 3.3e-56 224.2 259 45.6
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.0e-54 219.2 398 54.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 6.4e-44 183.3 510 66.1
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 1.1e-43 182.6 335 50.4
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 7.0e-43 179.9 486 69.5
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 1.9e-40 171.8 503 68.0
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 1.4e-38 165.6 546 58.8
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 7.1e-27 126.7 240 66.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.2e-26 125.9 114 56.1
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 8.6e-25 119.8 199 34.2
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 3.6e-23 114.4 80 71.2
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 4.0e-22 110.9 77 68.8
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 4.0e-22 110.9 215 29.8
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 5.2e-22 110.5 76 69.7
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.4e-21 107.5 77 70.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.0e-17 96.3 173 39.3
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 8.7e-17 93.2 209 27.8
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 2.8e-15 88.2 79 59.5
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-14 86.3 62 69.4
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 1.3e-09 69.3 223 23.3
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 3.9e-09 67.8 244 24.2
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 5.1e-09 67.4 48 66.7
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 8.7e-09 66.6 289 21.8
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 8.7e-09 66.6 175 26.3
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 1.5e-08 65.9 156 26.3
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 7.3e-08 63.5 206 22.8
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 7.3e-08 63.5 245 28.2
AagrBONN_evm.TU.Sc2ySwM_362.433 Anthoceros agrestis HOM05D003056 ORTHO05D038402 9.6e-08 63.2 130 27.7
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 9.6e-08 63.2 204 28.9
AL2G11780 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 1.3e-07 62.8 188 23.4
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.1e-07 62.0 155 24.5
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 2.1e-07 62.0 202 22.3
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 2.8e-07 61.6 204 29.4
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 3.6e-07 61.2 150 25.3
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.8e-07 60.8 225 20.9
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 4.8e-07 60.8 186 24.7
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 6.2e-07 60.5 184 25.5
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 6.2e-07 60.5 167 28.1
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.1e-06 59.7 58 51.7
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 1.4e-06 59.3 151 26.5
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 1.4e-06 59.3 178 26.4
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 1.4e-06 59.3 183 23.0
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 1.8e-06 58.9 158 28.5
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.8e-06 58.9 143 21.7
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.8e-06 58.9 154 26.6
Sabra05G0103000 Salix brachista HOM05D000891 ORTHO05D000761 1.8e-06 58.9 173 23.7
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 2.4e-06 58.5 144 24.3
Cpa.g.sc353.5 Carica papaya HOM05D000891 ORTHO05D000761 2.4e-06 58.5 171 28.1
Atru.BG.166.p Acer truncatum HOM05D000001 ORTHO05D000003 3.1e-06 58.2 171 23.4
FAN07G1351 Fragaria x ananassa HOM05D003056 ORTHO05D003422 3.1e-06 58.2 178 26.4
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 3.1e-06 58.2 167 27.5
Lsat_1_v5_gn_4_58301 Lactuca sativa HOM05D000891 ORTHO05D000761 3.1e-06 58.2 123 26.0
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 3.1e-06 58.2 159 27.0
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 3.1e-06 58.2 157 28.0
Potri.005G125400 Populus trichocarpa HOM05D000891 ORTHO05D000761 3.1e-06 58.2 112 25.9
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.1e-06 58.2 165 30.9
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 4.0e-06 57.8 123 24.4
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 4.0e-06 57.8 184 25.5
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 4.0e-06 57.8 184 25.5
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 4.0e-06 57.8 184 25.5
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 4.0e-06 57.8 167 26.9
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 5.3e-06 57.4 114 27.2
Lj2P449T26 Lonicera japonica HOM05D000891 ORTHO05D000761 5.3e-06 57.4 112 25.9
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 6.9e-06 57.0 184 25.5
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 9.0e-06 56.6 225 24.9
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 9.0e-06 56.6 144 20.8
Aa31LG8G15540 Aethionema arabicum HOM05D000891 ORTHO05D000761 9.0e-06 56.6 183 23.5
COL.COLO4_17790 Corchorus olitorius HOM05D007675 ORTHO05D009699 9.0e-06 56.6 111 29.7
FAN12G3026 Fragaria x ananassa HOM05D003056 ORTHO05D003422 9.0e-06 56.6 178 25.8


User provided reference genes

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