Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.8e-235 818.9 425 100.0
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.8e-102 377.1 220 90.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 6.2e-79 298.9 159 97.5
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 3.4e-77 293.1 171 91.8
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-62 245.0 261 54.0
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.4e-61 240.0 258 55.8
C03p48130 Brassica napus HOM05D008709 ORTHO05D011440 1.9e-59 234.2 125 97.6
BolC3t17093H Brassica oleracea HOM05D008709 ORTHO05D011440 1.9e-59 234.2 125 97.6
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.0e-53 214.2 256 50.4
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.6e-53 213.8 256 48.4
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.8e-53 212.6 230 52.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 7.6e-53 212.2 264 49.2
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 3.8e-52 209.9 251 49.4
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.9e-52 209.5 263 49.0
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-48 198.4 262 48.1
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.8e-46 191.0 223 50.2
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 7.9e-42 175.6 222 45.0
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.0e-41 173.7 232 43.1
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 9.7e-40 168.7 238 42.0
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.2e-39 167.5 278 38.8
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 6.3e-39 166.0 203 45.8
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 8.2e-39 165.6 223 42.2
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.1e-38 165.2 204 47.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.4e-38 164.9 279 38.7
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.4e-38 164.9 210 44.8
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.8e-38 164.5 281 38.4
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 2.6e-37 160.6 210 43.3
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.5e-37 159.8 176 52.8
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 5.9e-37 159.5 256 39.1
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.3e-36 158.3 275 37.8
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.2e-36 157.5 249 37.8
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.9e-36 157.1 217 41.5
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.8e-36 156.8 235 39.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.1e-35 155.2 259 37.8
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.1e-35 155.2 202 44.1
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.4e-35 154.8 185 45.9
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 2.5e-35 154.1 206 42.2
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.5e-35 154.1 181 46.4
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 3.2e-35 153.7 183 46.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.2e-35 153.7 249 37.3
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.2e-35 153.3 217 40.6
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 5.5e-35 152.9 267 36.3
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 5.5e-35 152.9 275 36.4
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 7.2e-35 152.5 276 38.0
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 9.4e-35 152.1 172 48.3
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 9.4e-35 152.1 285 37.5
BcaB04g18885 Brassica carinata HOM05D008709 ORTHO05D011440 1.6e-34 151.4 85 84.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.6e-34 151.4 268 36.9
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.1e-34 151.0 263 35.7
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.7e-34 150.6 181 46.4
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 3.6e-34 150.2 287 35.5
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 4.6e-34 149.8 304 34.9
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.6e-34 149.8 181 46.4
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 6.1e-34 149.4 277 36.1
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 6.1e-34 149.4 187 44.4
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 6.1e-34 149.4 275 37.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.1e-34 149.4 242 38.0
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 7.9e-34 149.1 277 36.8
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 7.9e-34 149.1 215 40.0
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.0e-33 148.7 268 36.2
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 1.0e-33 148.7 251 38.6
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.0e-33 148.7 288 36.8
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.0e-33 148.7 287 35.5
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.4e-33 148.3 214 41.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.4e-33 148.3 290 35.9
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.8e-33 147.9 215 41.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.3e-33 147.5 205 44.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.3e-33 147.5 281 36.3
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.3e-33 147.5 310 32.9
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 3.0e-33 147.1 196 42.9
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 3.0e-33 147.1 337 31.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 3.0e-33 147.1 276 36.6
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.0e-33 147.1 273 35.9
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.9e-33 146.7 290 37.6
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 5.1e-33 146.4 286 34.6
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 5.1e-33 146.4 173 49.7
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 5.1e-33 146.4 274 36.1
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 6.7e-33 146.0 274 38.3
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 6.7e-33 146.0 278 34.5
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 8.8e-33 145.6 179 45.8
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 8.8e-33 145.6 275 35.3
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.0e-32 144.4 288 34.0
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.5e-32 144.1 275 35.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.3e-32 143.7 290 37.6
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 3.3e-32 143.7 206 40.8
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.3e-32 143.7 273 36.3
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.3e-32 143.7 210 39.5
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 7.4e-32 142.5 228 39.5
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-31 141.7 289 34.3
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.7e-31 140.2 186 43.0
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 4.8e-31 139.8 259 34.7
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 4.8e-31 139.8 221 38.0
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 8.2e-31 139.0 171 49.1
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 8.2e-31 139.0 291 33.7
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 8.2e-31 139.0 234 38.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.1e-30 138.7 272 33.8
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.8e-30 137.9 186 42.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 3.1e-30 137.1 343 30.3
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 4.1e-30 136.7 280 36.8
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.3e-30 136.3 181 40.9
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 5.3e-30 136.3 148 52.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 5.3e-30 136.3 274 33.6
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.0e-29 134.4 278 34.5
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.4e-29 133.7 345 31.6
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.4e-29 133.7 274 34.3
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.4e-29 133.7 285 32.6
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.5e-29 133.3 307 31.3
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 4.5e-29 133.3 183 39.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.9e-29 132.9 199 39.2
BcaC01g03838 Brassica carinata HOM05D008709 ORTHO05D011440 7.7e-29 132.5 120 59.2
C03p48080 Brassica napus HOM05D008709 ORTHO05D011440 7.7e-29 132.5 120 59.2
BolC3t17089H Brassica oleracea HOM05D008709 ORTHO05D011440 7.7e-29 132.5 120 59.2
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 7.7e-29 132.5 166 44.6
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-28 132.1 250 36.4
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.3e-28 131.7 242 36.0
BraA03t13118Z Brassica rapa HOM05D008709 ORTHO05D011440 2.9e-28 130.6 120 58.3
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.9e-28 130.6 181 40.3
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.1e-27 128.6 181 40.3
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-27 128.3 274 33.2
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.4e-27 128.3 205 39.0
BraA03t13114Z Brassica rapa HOM05D008709 ORTHO05D011440 2.7e-26 124.0 120 55.0
BcaC01g01470 Brassica carinata HOM05D008709 ORTHO05D011440 2.3e-25 120.9 121 58.7
C03p92330 Brassica napus HOM05D008709 ORTHO05D011440 2.3e-25 120.9 121 58.7
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.9e-25 120.2 247 34.4
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 3.9e-25 120.2 165 43.0
BolC3t21545H Brassica oleracea HOM05D008709 ORTHO05D011440 5.1e-25 119.8 121 57.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 9.7e-24 115.5 274 32.1
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 6.3e-23 112.8 147 44.9
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 2.4e-22 110.9 170 39.4
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 3.1e-22 110.5 181 35.9
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.3e-22 109.8 131 46.6
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 5.3e-22 109.8 320 27.5
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 7.0e-22 109.4 162 42.0
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 9.1e-22 109.0 162 42.0
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.5e-21 108.2 187 34.8
BcaC01g03841 Brassica carinata HOM05D008709 ORTHO05D011440 1.0e-20 105.5 131 50.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.3e-20 105.1 163 41.1
BcaB04g18887 Brassica carinata HOM05D008709 ORTHO05D011440 6.5e-20 102.8 135 48.9
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 6.5e-20 102.8 189 37.0
BcaB04g18876 Brassica carinata HOM05D008709 ORTHO05D011440 1.5e-19 101.7 119 48.7
AT2G16005 Arabidopsis thaliana HOM05D008709 ORTHO05D011440 2.5e-19 100.9 120 50.8
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 2.1e-18 97.8 136 43.4
BcaB04g18875 Brassica carinata HOM05D008709 ORTHO05D021804 4.7e-18 96.7 126 45.2
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 4.7e-18 96.7 167 35.9
BraA03t13112Z Brassica rapa HOM05D008709 ORTHO05D011440 1.8e-17 94.7 128 47.7
BcaC01g03840 Brassica carinata HOM05D008709 ORTHO05D021804 2.3e-17 94.4 126 46.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 6.7e-17 92.8 121 43.8
A03p39650 Brassica napus HOM05D008709 ORTHO05D011440 1.1e-16 92.0 130 46.9
BcaB04g18874 Brassica carinata HOM05D008709 ORTHO05D011440 2.6e-16 90.9 133 42.9
BcaC01g03839 Brassica carinata HOM05D008709 ORTHO05D011440 2.6e-16 90.9 122 50.0
A03p39670 Brassica napus HOM05D008709 ORTHO05D011440 2.8e-15 87.4 81 58.0
BcaB04g18877 Brassica carinata HOM05D008709 ORTHO05D011440 6.3e-15 86.3 85 57.6
CARHR091160 Cardamine hirsuta HOM05D008709 ORTHO05D011440 4.1e-14 83.6 117 46.2
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.2e-13 82.0 194 33.5
CARHR091170 Cardamine hirsuta HOM05D008709 ORTHO05D011440 2.6e-13 80.9 122 42.6
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.3e-12 78.6 114 36.8
BolC3t17085H Brassica oleracea HOM05D008709 ORTHO05D011440 3.8e-12 77.0 124 42.7
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.9e-11 74.7 154 29.2
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 3.2e-11 73.9 190 28.9
C01p48280 Brassica napus HOM05D008709 ORTHO05D024458 2.1e-10 71.2 132 40.9
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.6e-10 70.5 133 34.6
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-10 70.1 137 36.5
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.0e-09 68.9 84 45.2
C03p48140 Brassica napus HOM05D008709 ORTHO05D011440 2.3e-09 67.8 78 56.4
BraA09t38151Z Brassica rapa HOM05D014281 ORTHO05D027372 5.2e-09 66.6 156 35.3
BraA03t13117Z Brassica rapa HOM05D008709 ORTHO05D011440 1.2e-08 65.5 79 53.2
CARHR091180 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.2e-08 65.5 123 38.2
A03p39690 Brassica napus HOM05D008709 ORTHO05D011440 2.6e-08 64.3 79 51.9
BraA03t13116Z Brassica rapa HOM05D008709 ORTHO05D021804 2.6e-08 64.3 89 42.7
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 9.7e-08 62.4 209 23.9
A03p39680 Brassica napus HOM05D008709 ORTHO05D021804 2.2e-07 61.2 89 41.6
C03p48060 Brassica napus HOM05D008709 ORTHO05D021804 2.2e-07 61.2 113 37.2
BolC3t17087H Brassica oleracea HOM05D008709 ORTHO05D021804 2.2e-07 61.2 113 37.2
C01p25000 Brassica napus HOM05D014281 ORTHO05D027372 4.8e-07 60.1 119 36.1
BolC1t02444H Brassica oleracea HOM05D014281 ORTHO05D027372 4.8e-07 60.1 119 36.1
BcaB01g01201 Brassica carinata HOM05D002139 ORTHO05D002264 1.4e-06 58.5 105 41.0
Thhalv10010794m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 1.4e-06 58.5 134 35.8
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 2.4e-06 57.8 96 34.4
A06p22210 Brassica napus HOM05D002139 ORTHO05D002264 4.1e-06 57.0 105 40.0
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 5.3e-06 56.6 134 31.3
Carub.0005s0985 Capsella rubella HOM05D002139 ORTHO05D002264 5.3e-06 56.6 105 42.9
CARHR152880 Cardamine hirsuta HOM05D002139 ORTHO05D002264 5.3e-06 56.6 107 40.2
AL5G22100 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 9.1e-06 55.8 107 43.9


User provided reference genes

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