Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.7e-88 328.6 160 100.0
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 8.0e-80 300.4 156 96.2
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 5.7e-78 294.3 150 96.0
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 5.4e-76 287.7 156 92.3
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.5e-75 284.6 150 93.3
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.5e-75 284.6 146 94.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.0e-74 283.5 148 91.2
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.5e-73 279.6 149 89.9
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 7.3e-73 277.3 148 89.9
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.0e-70 269.2 148 87.8
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.7e-69 266.2 146 89.0
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.1e-65 253.4 146 81.5
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.1e-60 236.9 148 77.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 7.0e-60 234.2 144 79.2
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.6e-59 233.0 144 77.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.1e-59 232.6 144 76.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.7e-59 232.3 144 77.8
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.7e-59 232.3 144 78.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 3.5e-59 231.9 146 78.8
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 4.6e-59 231.5 146 76.0
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 6.0e-59 231.1 144 77.8
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 7.8e-59 230.7 144 77.1
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 3.0e-58 228.8 144 76.4
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 3.0e-58 228.8 146 76.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.9e-58 228.4 146 75.3
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 3.9e-58 228.4 144 73.6
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 5.1e-58 228.0 144 75.0
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 8.6e-58 227.3 146 75.3
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.1e-57 226.9 147 72.8
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.5e-57 226.5 145 73.8
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.5e-57 225.7 144 76.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 3.3e-57 225.3 142 76.8
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 4.3e-57 224.9 144 73.6
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.1e-56 222.6 144 74.3
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 2.1e-56 222.6 146 74.7
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 2.1e-56 222.6 144 76.4
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 2.8e-56 222.2 156 73.1
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.8e-56 222.2 145 75.2
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.6e-56 221.9 144 72.9
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 3.6e-56 221.9 144 75.0
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 6.2e-56 221.1 145 75.2
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 6.2e-56 221.1 144 72.9
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-55 220.3 113 96.5
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.1e-55 220.3 142 73.9
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.4e-55 219.9 144 73.6
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.4e-55 219.9 142 73.9
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.3e-55 219.2 145 74.5
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.1e-55 218.8 147 72.8
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 4.0e-55 218.4 144 71.5
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.0e-55 218.4 146 71.2
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 4.0e-55 218.4 146 71.2
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 5.2e-55 218.0 163 68.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 8.9e-55 217.2 144 71.5
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.5e-54 216.5 142 71.8
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.5e-54 216.5 144 72.2
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.5e-54 216.5 142 71.8
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 2.0e-54 216.1 144 71.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.0e-54 216.1 145 73.8
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 2.0e-54 216.1 144 72.2
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.6e-54 215.7 149 67.8
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 3.4e-54 215.3 143 72.7
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.4e-54 215.3 145 73.1
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.4e-54 215.3 157 67.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 4.4e-54 214.9 146 71.2
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.9e-54 213.8 149 69.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.3e-53 213.4 145 70.3
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.7e-53 213.0 150 68.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.2e-53 212.6 146 70.5
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 2.9e-53 212.2 144 70.8
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.9e-53 212.2 148 70.9
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-52 210.3 145 69.7
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.4e-52 209.9 143 72.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.4e-52 209.1 144 68.8
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 5.4e-52 208.0 144 69.4
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 9.2e-52 207.2 144 66.7
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.6e-51 206.5 150 68.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.6e-51 206.5 144 68.1
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 2.1e-51 206.1 146 68.5
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.7e-51 205.7 143 66.4
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.5e-51 205.3 144 68.1
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 3.5e-51 205.3 144 68.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 3.5e-51 205.3 144 66.0
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.8e-51 204.1 144 68.1
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.8e-51 204.1 144 66.7
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 7.8e-51 204.1 144 66.0
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.7e-50 203.0 144 69.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.1e-50 201.4 144 66.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.1e-50 201.4 162 60.5
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.6e-49 198.0 144 67.4
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 5.6e-49 198.0 144 67.4
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.3e-49 197.6 151 66.9
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.2e-48 196.8 147 65.3
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.1e-48 196.1 150 66.7
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.8e-48 195.7 147 63.9
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.4e-47 192.6 126 74.6
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.0e-46 189.5 148 66.2
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 9.9e-46 187.2 144 63.9
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 4.9e-45 184.9 148 62.2
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.2e-44 182.2 148 61.5
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 5.4e-44 181.4 126 71.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.4e-44 181.4 148 60.1
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 9.2e-44 180.6 125 72.0
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 9.2e-44 180.6 148 61.5
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.0e-42 177.2 146 63.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-42 176.8 146 63.0
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.7e-42 176.4 146 62.3
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 3.3e-41 172.2 146 56.8
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 2.8e-40 169.1 121 67.8
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 3.6e-40 168.7 142 57.0
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.0e-38 162.9 140 57.1
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.0e-38 162.9 127 68.5
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-37 160.2 145 57.2
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.9e-37 158.3 144 57.6
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.1e-36 157.1 141 55.3
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.3e-36 154.1 121 64.5
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.9e-33 146.4 145 49.7
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 9.6e-33 144.1 141 49.6
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-32 143.3 125 59.2
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 5.3e-31 138.3 148 52.0
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.2e-29 132.9 127 56.7
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.4e-28 129.4 126 56.3
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 5.4e-28 128.3 149 47.0
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.1e-28 127.9 115 58.3
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 7.1e-28 127.9 144 48.6
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.2e-27 127.1 141 52.5
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 7.9e-27 124.4 89 70.8
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 9.3e-20 100.9 88 56.8
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.6e-19 100.1 69 69.6
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.6e-19 100.1 72 68.1
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 5.6e-17 91.7 162 32.7
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 4.8e-16 88.6 55 74.5
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 6.2e-16 88.2 63 61.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 2.6e-14 82.8 60 65.0
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 3.4e-14 82.4 62 64.5
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 5.8e-14 81.6 120 36.7
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.7e-13 80.1 49 67.3
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.9e-13 79.3 56 64.3
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.1e-12 77.4 65 53.8
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 1.1e-07 60.8 51 62.7


User provided reference genes

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