Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1412.1 719 100.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1412.1 719 100.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1383.6 719 98.1
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1364.7 737 95.4
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1361.3 721 96.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1340.1 702 98.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1323.5 732 93.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1305.4 726 92.3
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1278.1 726 90.5
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1276.5 727 90.0
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1269.6 726 89.9
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1261.5 728 89.6
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1199.1 736 85.5
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 709 83.6
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1113.6 675 82.8
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1112.8 723 79.5
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1107.8 638 86.2
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1105.9 705 79.9
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1104.4 633 86.4
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1103.6 702 79.6
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 633 86.4
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 635 86.0
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1102.4 686 81.0
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1100.9 633 86.3
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1100.9 692 81.5
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1100.1 626 87.5
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1100.1 714 79.6
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1097.4 670 83.0
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1096.3 706 79.6
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1094.7 708 79.5
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 689 80.8
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1090.5 630 85.9
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 713 78.7
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 645 83.9
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 649 83.7
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 691 80.2
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 711 78.8
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 650 83.2
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 646 83.7
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 698 79.9
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 718 77.3
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1087.0 639 84.0
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1086.6 698 79.8
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1086.2 645 83.6
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 697 79.8
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1085.5 701 79.6
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 702 79.5
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 647 84.2
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1083.2 725 77.0
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1082.4 678 80.5
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 713 78.7
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 730 77.1
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 708 78.4
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1080.1 630 85.7
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1079.7 697 79.8
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 695 79.3
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 9.8e-312 1073.2 688 78.8
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 9.8e-312 1073.2 711 77.8
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 9.8e-311 1069.7 700 79.0
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 1.7e-310 1068.9 670 80.9
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 4.9e-310 1067.4 633 82.5
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.8e-309 1065.4 701 78.6
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 2.4e-309 1065.1 700 78.1
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 4.1e-309 1064.3 715 78.0
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 1.3e-307 1059.3 656 80.3
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 3.8e-307 1057.7 646 82.0
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 1.1e-306 1056.2 712 75.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 4.3e-306 1054.3 635 81.9
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 4.3e-306 1054.3 775 71.4
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 4.3e-306 1054.3 775 71.4
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 3.7e-302 1041.2 645 81.2
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 5.4e-301 1037.3 631 80.5
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 7.0e-301 1036.9 713 75.5
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.5e-300 1034.6 667 79.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 2.3e-299 1031.9 663 79.6
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.5e-298 1028.5 709 75.0
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 8.9e-296 1020.0 690 76.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 3.5e-292 1008.1 663 76.5
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 4.6e-292 1007.7 867 63.0
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.1e-290 1003.0 645 78.6
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.6e-289 999.2 722 73.7
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 7.5e-287 990.3 682 72.9
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 8.3e-286 986.9 688 74.9
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 1.6e-281 972.6 623 80.1
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.0e-279 965.7 710 71.1
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 5.8e-279 964.1 634 75.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.8e-272 942.6 566 83.2
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.1e-265 919.1 602 75.2
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.8e-259 899.4 525 85.5
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 7.4e-258 894.0 628 73.6
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.1e-256 890.2 567 81.0
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 6.9e-256 887.5 552 82.2
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.2e-255 886.7 522 84.5
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 4.5e-255 884.8 513 85.2
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.7e-254 882.9 623 70.6
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 9.3e-253 877.1 534 81.3
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.0e-251 873.6 526 82.1
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.5e-246 854.4 558 77.6
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 9.3e-245 850.5 605 72.7
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 4.8e-241 838.2 703 63.0
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.0e-227 792.3 442 87.8
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.6e-226 789.3 456 85.3
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 3.8e-222 775.4 611 64.8
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.0e-203 714.1 504 73.2
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.3e-190 670.6 383 84.6
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.9e-181 640.2 404 80.2
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.2e-178 630.9 415 76.6
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.3e-174 617.5 354 85.0
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.9e-166 589.3 403 73.4
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 4.5e-146 522.7 355 78.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 3.0e-142 510.0 382 72.8
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.0e-134 485.0 449 60.1
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.5e-130 471.1 606 43.1
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 4.1e-123 446.4 335 72.2
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 5.9e-122 442.6 643 40.0
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 3.1e-107 393.7 695 37.7
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-102 378.6 488 44.9
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-101 375.2 348 59.2
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.8e-83 314.7 216 75.5
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 3.6e-79 300.4 161 91.3
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 8.9e-70 269.2 161 82.6
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.7e-57 228.4 209 58.4
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.2e-55 222.2 166 63.9
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 3.5e-50 204.1 154 70.8
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.3e-44 185.7 104 89.4
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.3e-41 175.6 230 46.1
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 4.8e-39 167.2 105 75.2
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.1e-38 164.5 182 47.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.5e-37 162.2 106 75.5
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 4.5e-37 160.6 175 53.1
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 8.7e-33 146.4 114 66.7
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 3.3e-32 144.4 83 83.1
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 2.8e-31 141.4 97 74.2
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.4e-30 139.0 70 94.3
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 2.0e-29 135.2 71 81.7
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.8e-25 122.1 137 51.1
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.4e-21 107.8 96 57.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 7.6e-21 106.7 70 77.1
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.0e-20 106.3 80 67.5
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 8.7e-17 93.2 75 66.7
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 8.7e-17 93.2 73 64.4
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 6.3e-15 87.0 47 76.6
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.5e-13 82.4 48 75.0
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.1e-11 76.3 79 57.0


User provided reference genes

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