Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1177.2 603 100.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 0.0e+00 1177.2 603 100.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1177.2 603 100.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 0.0e+00 1167.9 603 99.2
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1166.8 603 99.0
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1131.7 603 96.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 0.0e+00 1107.0 603 93.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1090.5 597 92.5
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 0.0e+00 1087.8 605 92.1
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1085.9 601 91.3
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 4.1e-310 1067.4 605 90.1
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 5.0e-308 1060.4 603 89.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.7e-306 1054.7 601 89.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-304 1048.5 624 87.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 3.7e-303 1044.3 602 88.5
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 4.1e-302 1040.8 603 87.6
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.9e-284 981.5 601 82.0
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.8e-284 981.1 601 82.5
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 9.5e-275 949.9 598 79.9
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.0e-272 942.2 598 79.3
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.3e-271 939.5 598 79.3
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.3e-271 936.8 598 78.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.9e-268 927.9 598 77.8
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.6e-267 924.1 603 76.9
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.7e-266 921.0 606 77.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 6.2e-266 920.6 596 77.7
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.1e-265 919.8 591 77.7
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.8e-265 919.1 600 77.2
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.1e-265 918.3 598 77.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.6e-264 915.2 592 77.5
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.4e-264 914.8 598 77.1
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 4.4e-264 914.4 614 75.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 7.5e-264 913.7 600 76.3
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.7e-263 912.5 601 76.5
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.4e-262 909.4 594 77.1
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.9e-262 909.1 599 76.3
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 5.4e-262 907.5 646 72.3
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.1e-261 905.6 591 77.2
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 4.6e-261 904.4 599 76.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-260 902.5 601 76.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-260 902.1 602 76.1
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 5.1e-260 901.0 602 75.4
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 8.6e-260 900.2 622 74.0
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.5e-259 899.4 599 75.5
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 2.5e-259 898.7 601 75.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-259 897.9 601 76.2
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.2e-258 896.3 596 75.5
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.2e-258 896.3 599 75.1
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.2e-258 894.0 598 74.4
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 8.1e-258 893.6 599 74.6
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.1e-257 893.3 596 74.5
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.4e-257 892.9 599 75.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.4e-257 892.9 596 75.0
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.3e-257 892.1 603 73.8
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.1e-257 891.7 596 75.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.9e-257 890.2 601 75.5
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.5e-256 889.4 601 74.7
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.0e-256 889.0 596 75.3
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.6e-256 888.6 601 75.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 4.4e-256 887.9 606 75.1
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-255 886.3 601 75.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.3e-255 886.3 603 73.6
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.7e-255 885.9 603 73.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.7e-255 884.8 598 74.7
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 4.9e-255 884.4 594 74.4
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.9e-255 884.4 599 74.5
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-254 883.2 616 73.4
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-254 883.2 605 74.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.9e-254 882.5 603 73.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.2e-254 881.7 599 73.6
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.2e-254 881.7 598 74.9
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 7.1e-254 880.6 605 74.0
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 9.2e-254 880.2 599 74.1
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-253 879.8 479 93.7
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.2e-253 879.8 603 73.0
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 3.5e-253 878.2 567 77.6
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.5e-253 878.2 602 74.1
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 6.0e-253 877.5 679 67.9
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.0e-252 876.7 591 74.8
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.0e-252 876.7 598 74.2
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.0e-252 876.7 603 72.3
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.9e-252 874.8 603 72.0
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.5e-251 872.8 603 72.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.5e-251 872.1 615 71.7
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.6e-250 869.4 596 72.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.4e-249 866.3 601 73.0
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 7.6e-248 860.5 607 71.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.1e-246 856.7 597 72.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.1e-246 856.7 655 67.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.1e-245 852.4 594 72.4
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 5.1e-244 847.8 595 70.3
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 5.1e-244 847.8 589 72.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-242 842.0 601 72.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 6.9e-241 837.4 548 77.0
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.2e-240 836.6 597 69.7
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 9.9e-240 833.6 601 69.4
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 9.9e-240 833.6 600 69.7
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-239 832.0 600 69.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 3.8e-239 831.6 568 74.5
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 3.2e-238 828.6 541 76.0
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-237 826.6 564 75.0
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.6e-237 826.2 561 73.1
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.6e-236 820.8 550 74.4
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 4.0e-233 811.6 596 70.8
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.6e-232 807.4 596 70.1
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.9e-231 805.4 596 70.0
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 3.3e-227 792.0 613 66.6
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 5.6e-227 791.2 430 93.0
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.8e-225 786.2 639 64.3
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.1e-218 762.7 600 65.3
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.2e-216 756.9 476 80.3
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.0e-216 756.1 652 59.8
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.0e-215 753.8 496 76.8
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 4.9e-215 751.5 599 64.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.6e-213 745.0 503 74.0
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.3e-212 743.4 598 63.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.4e-208 728.8 601 63.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.9e-192 674.9 551 64.6
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-180 637.5 366 89.9
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 2.3e-180 636.3 440 72.7
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.4e-177 627.1 503 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.0e-172 609.0 604 53.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.5e-168 595.9 599 51.4
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 9.5e-166 587.8 570 52.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 1.4e-156 557.4 439 64.2
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 8.9e-140 501.5 336 74.4
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.2e-139 501.1 618 45.1
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.4e-132 476.9 418 59.3
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.0e-127 461.5 577 43.0
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.6e-127 458.8 531 51.6
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.3e-126 456.1 334 70.1
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.4e-123 446.4 286 79.0
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-111 408.3 246 79.7
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 9.0e-108 395.2 281 71.9
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.1e-102 378.3 437 48.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-87 328.6 272 64.0
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 7.4e-86 322.4 316 55.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.6e-78 297.4 156 94.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.2e-75 288.5 673 31.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.2e-69 265.8 176 76.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.0e-66 258.8 546 33.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.0e-55 220.7 153 73.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.4e-54 217.2 149 73.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.6e-42 176.0 102 83.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.5e-41 174.5 636 27.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.6e-40 171.8 105 79.0
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-40 169.5 97 85.6
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 6.6e-34 149.8 97 73.2
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.7e-32 143.7 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.8e-30 136.7 186 43.5
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.9e-29 134.4 120 53.3
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.4e-22 110.5 66 80.3
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.9e-20 105.1 69 66.7
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 7.1e-20 103.2 72 65.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.5e-19 100.9 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 5.1e-18 97.1 619 24.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 9.6e-17 92.8 193 33.7
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.1e-15 87.8 95 55.8
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 5.8e-14 83.6 71 52.1
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.3e-13 82.4 49 75.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.4e-13 79.7 48 75.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-08 65.5 51 64.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 3.6e-08 64.3 59 59.3
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.8e-08 63.9 51 62.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 3.4e-06 57.8 52 59.6


User provided reference genes

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