Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 2.8e-202 708.4 347 100.0
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 2.8e-202 708.4 347 100.0
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 6.8e-201 703.7 347 99.4
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 1.2e-200 703.0 347 99.1
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 2.6e-200 701.8 347 98.8
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 8.4e-183 643.7 367 89.4
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 4.8e-170 601.3 368 84.0
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 7.1e-158 560.8 351 81.5
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 1.6e-157 559.7 368 78.0
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 2.3e-156 555.8 363 78.8
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 5.3e-153 544.7 355 80.0
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 4.8e-146 521.5 327 82.0
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.8e-129 466.5 349 69.1
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 1.7e-127 459.9 306 71.6
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 2.2e-127 459.5 305 72.8
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 3.8e-127 458.8 306 73.5
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 1.1e-126 457.2 326 70.2
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 3.2e-126 455.7 308 72.4
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 9.4e-126 454.1 306 73.9
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 9.4e-126 454.1 305 71.8
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 1.6e-125 453.4 306 72.9
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 3.6e-125 452.2 304 71.4
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 4.7e-125 451.8 306 73.2
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 8.0e-125 451.1 340 68.8
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.4e-124 450.3 305 71.5
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 1.4e-124 450.3 304 72.0
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 3.9e-124 448.7 311 70.7
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 6.7e-124 448.0 308 70.5
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 8.8e-124 447.6 301 73.1
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 8.8e-124 447.6 310 71.6
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 1.5e-123 446.8 304 70.4
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 3.3e-123 445.7 300 73.0
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 7.4e-123 444.5 303 70.3
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 9.7e-123 444.1 300 72.7
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 1.3e-122 443.7 347 64.8
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 1.7e-122 443.4 305 70.8
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.7e-122 443.4 305 70.2
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 2.2e-122 443.0 305 70.2
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 2.8e-122 442.6 303 70.3
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 3.7e-122 442.2 295 72.2
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 3.7e-122 442.2 304 70.7
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 4.8e-122 441.8 304 70.7
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 6.3e-122 441.4 305 70.5
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 8.2e-122 441.0 297 73.1
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 8.2e-122 441.0 304 71.1
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 1.8e-121 439.9 341 65.4
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 3.1e-121 439.1 304 70.1
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 3.1e-121 439.1 298 72.1
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 5.3e-121 438.3 306 70.6
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 5.3e-121 438.3 306 68.3
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 9.1e-121 437.6 303 69.0
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.2e-120 437.2 296 71.3
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 1.2e-120 437.2 306 69.3
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 1.2e-120 437.2 306 70.9
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 1.6e-120 436.8 304 70.7
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.6e-120 436.8 304 69.1
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 2.0e-120 436.4 325 66.5
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 2.6e-120 436.0 324 67.9
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 7.7e-120 434.5 307 69.7
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 1.0e-119 434.1 295 69.8
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 1.3e-119 433.7 306 71.2
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.3e-119 433.7 349 63.3
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 3.8e-119 432.2 306 69.3
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 3.8e-119 432.2 305 68.5
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 3.8e-119 432.2 311 67.5
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 8.5e-119 431.0 306 70.3
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.5e-118 430.3 326 66.3
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 1.9e-118 429.9 304 69.1
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 3.2e-118 429.1 302 68.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.2e-118 428.7 296 70.3
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 1.2e-117 427.2 320 65.9
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 1.2e-117 427.2 262 76.0
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 1.6e-117 426.8 344 63.7
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 1.6e-117 426.8 306 68.3
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 4.7e-117 425.2 305 67.9
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 8.0e-117 424.5 343 65.9
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.0e-116 424.1 246 80.5
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 1.4e-116 423.7 289 72.7
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 4.0e-116 422.2 306 68.3
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 8.8e-116 421.0 308 68.5
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 5.7e-115 418.3 349 63.3
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 2.8e-114 416.0 306 67.6
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 4.8e-114 415.2 275 70.2
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.1e-113 414.1 347 63.1
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 5.9e-112 408.3 310 65.8
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 5.9e-112 408.3 333 60.1
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 1.1e-110 404.1 308 67.5
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.9e-110 403.3 232 80.6
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 2.5e-110 402.9 232 80.6
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 3.2e-110 402.5 308 67.2
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 3.2e-110 402.5 245 76.3
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 4.7e-109 398.7 323 61.6
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.4e-108 397.1 347 58.5
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 2.8e-106 389.4 234 76.5
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.8e-105 386.7 217 82.0
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 2.3e-103 379.8 297 64.0
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 2.4e-97 359.8 313 62.9
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 5.4e-97 358.6 303 61.4
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 2.3e-95 353.2 302 59.3
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 2.8e-93 346.3 233 69.1
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 4.6e-88 328.9 322 55.6
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.7e-82 310.5 179 80.4
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.7e-82 310.5 179 80.4
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 4.9e-82 308.9 353 47.6
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 3.3e-78 296.2 207 68.6
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 2.0e-75 287.0 197 69.5
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 2.9e-74 283.1 222 63.1
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 8.9e-68 261.5 189 64.6
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 2.5e-62 243.4 153 75.2
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 1.4e-57 227.6 201 57.2
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 1.2e-43 181.4 166 52.4
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 3.3e-30 136.7 78 76.9
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 1.4e-23 114.8 106 56.6
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 7.7e-19 99.0 146 43.8
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.3e-18 98.2 59 78.0
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 3.5e-11 73.6 52 65.4
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 6.1e-08 62.8 174 28.7
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 1.5e-06 58.2 170 27.6
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 4.4e-06 56.6 170 25.9
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 4.4e-06 56.6 171 26.9
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 4.4e-06 56.6 170 27.1


User provided reference genes

Program Settings