Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 0.0e+00 1692.9 876 100.0
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 0.0e+00 1335.5 869 82.9
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 0.0e+00 1335.5 869 82.9
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 0.0e+00 1324.7 869 82.3
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 0.0e+00 1318.9 870 81.6
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 0.0e+00 1318.5 870 82.6
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1317.0 870 82.4
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 0.0e+00 1316.6 869 81.7
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 0.0e+00 1314.3 886 81.0
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1313.1 870 82.3
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 0.0e+00 1308.9 888 80.1
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 0.0e+00 1204.5 884 74.9
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 0.0e+00 1162.5 728 87.2
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 2.9e-309 1065.1 842 67.6
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.8e-306 1055.8 887 65.4
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 9.8e-305 1050.0 883 65.3
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.7e-304 1049.3 870 67.0
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 2.2e-304 1048.9 884 65.3
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 4.9e-304 1047.7 887 65.3
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 9.2e-303 1043.5 883 65.3
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 1.0e-301 1040.0 887 64.8
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 6.6e-301 1037.3 896 64.3
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 6.6e-301 1037.3 889 63.8
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 8.6e-301 1036.9 878 64.7
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 1.1e-300 1036.6 830 67.6
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 4.3e-300 1034.6 887 64.5
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 4.3e-300 1034.6 885 64.7
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.6e-299 1032.7 887 64.0
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 4.7e-299 1031.2 883 64.1
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.0e-298 1030.0 886 64.2
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 1.4e-298 1029.6 879 64.3
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 3.0e-298 1028.5 882 64.3
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 1.2e-297 1026.5 886 64.0
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.2e-297 1026.5 879 64.5
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 1.3e-296 1023.1 887 63.1
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.7e-296 1022.7 887 64.9
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.7e-296 1022.7 887 64.9
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 2.2e-296 1022.3 879 64.1
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 2.9e-296 1021.9 900 62.6
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 6.4e-296 1020.8 887 64.8
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 4.1e-295 1018.1 887 62.8
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.6e-294 1016.1 883 62.5
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 2.7e-294 1015.4 883 63.2
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 5.9e-294 1014.2 879 64.1
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 5.9e-294 1014.2 890 62.8
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 7.8e-294 1013.8 843 66.9
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 3.0e-293 1011.9 830 66.5
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 5.0e-293 1011.1 886 63.7
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 2.1e-291 1005.7 884 62.4
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 2.1e-291 1005.7 878 64.2
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 4.7e-291 1004.6 888 62.6
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 5.2e-290 1001.1 874 63.5
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.5e-289 999.6 887 61.9
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 2.0e-289 999.2 866 64.7
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 2.0e-289 999.2 885 62.9
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 7.5e-289 997.3 875 63.0
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 1.7e-288 996.1 885 62.8
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 1.1e-287 993.4 888 63.1
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.9e-287 992.6 915 60.2
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 3.2e-287 991.9 883 62.5
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 2.0e-286 989.2 875 62.7
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 4.6e-286 988.0 886 61.3
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 3.9e-285 984.9 875 62.1
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 5.6e-284 981.1 835 63.7
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.6e-283 979.5 885 61.6
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 2.1e-283 979.2 875 62.3
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 8.1e-283 977.2 877 60.9
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 8.1e-283 977.2 847 62.2
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.8e-282 976.1 847 63.6
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 3.1e-282 975.3 876 62.3
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.2e-281 973.4 877 61.8
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 2.0e-281 972.6 877 61.3
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 4.4e-281 971.5 858 61.8
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 9.8e-281 970.3 899 60.1
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 4.6e-278 961.4 858 61.3
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.0e-277 960.3 882 61.0
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 1.3e-277 959.9 885 61.4
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 2.3e-277 959.1 885 60.7
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 2.3e-277 959.1 862 61.6
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 3.9e-277 958.4 882 60.3
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 8.6e-277 957.2 873 62.4
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 2.5e-276 955.7 885 60.3
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 3.3e-276 955.3 889 60.0
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 1.2e-275 953.4 883 60.5
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 6.2e-275 951.0 981 56.6
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 1.1e-274 950.3 882 60.9
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 1.1e-274 950.3 883 60.4
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 1.8e-274 949.5 879 59.3
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 4.0e-274 948.3 876 60.0
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 8.9e-274 947.2 890 59.3
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 5.8e-273 944.5 888 59.5
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 4.6e-270 934.9 879 59.8
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 3.9e-269 931.8 882 59.8
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 5.1e-269 931.4 882 59.4
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 9.6e-268 927.2 883 59.2
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 4.0e-266 921.8 887 58.2
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 2.6e-265 919.1 878 59.5
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 3.4e-265 918.7 856 59.7
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.3e-261 906.0 745 67.1
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 1.1e-260 903.7 863 59.1
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 4.8e-259 898.3 885 57.6
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 6.2e-259 897.9 847 59.5
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 8.4e-256 887.5 830 58.7
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 7.1e-255 884.4 670 73.3
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 1.3e-253 880.2 887 57.2
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 1.3e-253 880.2 785 61.3
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 5.1e-253 878.2 895 56.1
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 8.7e-253 877.5 881 56.0
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 7.4e-252 874.4 859 57.3
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 5.3e-242 841.6 874 53.7
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 6.9e-242 841.3 874 53.9
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 7.1e-239 831.2 857 54.6
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.8e-234 816.6 883 53.0
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 2.4e-234 816.2 746 61.5
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 5.0e-232 808.5 857 55.9
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.9e-228 796.6 878 52.1
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 1.6e-227 793.5 875 51.9
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 1.1e-226 790.8 866 52.8
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 8.8e-221 771.2 478 87.4
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 1.8e-218 763.5 726 58.7
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 2.3e-213 746.5 642 63.7
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 9.1e-202 708.0 643 60.0
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.3e-192 677.6 516 69.8
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 1.5e-180 637.5 696 54.0
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 6.8e-165 585.5 536 60.6
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 5.8e-156 555.8 885 39.4
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 4.7e-150 536.2 455 64.4
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 4.3e-143 513.1 897 38.8
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 9.9e-140 501.9 671 47.4
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 1.4e-138 498.0 360 76.4
BraA08t34187Z Brassica rapa HOM05D004035 ORTHO05D004631 1.6e-134 484.6 280 88.6
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 5.8e-132 476.1 403 65.3
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 2.4e-130 470.7 893 34.8
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 3.1e-125 453.8 396 64.9
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 3.1e-125 453.8 415 62.2
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 1.3e-123 448.4 414 59.9
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 3.8e-123 446.8 342 71.9
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 8.2e-102 375.9 665 39.2
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 5.0e-99 366.7 371 55.5
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 1.5e-79 302.0 443 46.0
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 2.2e-78 298.1 394 46.7
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 4.5e-76 290.4 270 61.1
SHI32099 Sapria himalayana HOM05D004035 ORTHO05D004631 1.5e-74 285.4 303 55.1
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 5.7e-71 273.5 255 62.4
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 1.8e-69 268.5 197 76.1
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 1.3e-51 209.1 913 26.1
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 2.4e-37 161.8 184 46.7
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 1.1e-34 152.9 187 48.1
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.8e-33 148.3 179 52.5
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 2.0e-31 142.1 93 81.7
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 2.0e-31 142.1 93 81.7
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 1.9e-29 135.6 92 68.5
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.6e-28 132.5 91 67.0
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 7.8e-28 130.2 96 60.4
SHI32100 Sapria himalayana HOM05D004035 ORTHO05D000001 2.5e-26 125.2 83 72.3
Lsat_1_v5_gn_8_105180 Lactuca sativa HOM05D004035 ORTHO05D004631 5.6e-26 124.0 201 45.3
ATR0800G151 Amborella trichopoda HOM05D004035 ORTHO05D004631 2.4e-24 118.6 193 36.8
TPR.G13595 Trifolium pratense HOM05D004035 ORTHO05D004631 2.4e-24 118.6 142 52.1
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 4.0e-24 117.9 83 62.7
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 2.2e-22 112.1 237 36.3
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 1.1e-21 109.8 620 25.5
TPR.G13579 Trifolium pratense HOM05D004035 ORTHO05D004631 3.3e-18 98.2 92 55.4
Duzib264G0986 Durio zibethinus HOM05D004035 ORTHO05D004631 3.7e-17 94.7 308 29.5
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 6.9e-16 90.5 851 23.0
Cfa025411 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.4e-13 82.8 694 21.2
ECA234G0325 Erigeron canadensis HOM05D005380 ORTHO05D006601 5.3e-08 64.3 562 22.4
ECA247G3537 Erigeron canadensis HOM05D005380 ORTHO05D006601 1.2e-07 63.2 569 22.0
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 2.2e-06 58.9 75 46.7


User provided reference genes

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