Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 4.2e-214 748.0 468 100.0
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 4.2e-214 748.0 468 100.0
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-196 689.1 468 90.6
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 4.2e-177 625.2 475 80.8
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 7.8e-176 620.9 471 79.8
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 7.1e-161 571.2 472 72.7
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 5.3e-140 501.9 527 62.0
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.7e-138 496.9 504 65.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 3.8e-138 495.7 504 64.5
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.4e-135 487.3 483 63.4
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.8e-135 486.9 511 63.6
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 3.9e-135 485.7 506 63.0
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 4.2e-129 465.7 438 67.6
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.8e-127 460.3 517 63.6
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 8.8e-127 458.0 506 63.6
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 2.6e-126 456.4 403 67.0
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 6.5e-122 441.8 520 66.0
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.0e-119 434.5 520 62.3
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 3.1e-116 422.9 430 61.9
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 3.5e-115 419.5 395 65.6
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 3.2e-105 386.3 458 53.5
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 9.4e-105 384.8 458 53.5
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.2e-104 384.4 394 60.2
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 2.1e-104 383.6 446 53.6
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 2.7e-104 383.3 458 53.3
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 3.6e-104 382.9 427 58.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 6.1e-104 382.1 448 53.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.3e-103 380.2 438 55.5
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 3.0e-103 379.8 329 64.1
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 3.0e-103 379.8 499 53.1
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.5e-102 377.5 501 54.1
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 1.7e-101 374.0 399 60.7
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.2e-101 373.6 435 57.7
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.2e-101 373.6 427 56.0
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.8e-101 373.2 324 63.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.8e-101 373.2 328 62.2
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.8e-101 373.2 414 55.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 2.8e-101 373.2 329 63.2
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 2.8e-101 373.2 449 54.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 3.7e-101 372.9 460 54.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.4e-100 370.9 327 63.0
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.4e-100 370.9 351 61.8
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.4e-100 370.9 398 58.8
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.8e-100 370.5 432 57.6
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 1.8e-100 370.5 429 55.0
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 5.4e-100 369.0 326 62.3
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.0e-99 367.1 534 50.0
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.7e-99 366.7 360 61.4
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.7e-99 366.7 413 55.0
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.5e-99 366.3 325 63.4
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 4.5e-99 365.9 445 56.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 5.9e-99 365.5 374 56.7
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 5.9e-99 365.5 323 61.9
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.3e-98 364.4 528 50.0
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.9e-98 363.2 526 50.6
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 3.8e-98 362.8 375 56.8
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 8.6e-98 361.7 327 60.9
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.1e-97 361.3 319 61.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.5e-97 360.9 391 54.7
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.9e-97 360.5 325 61.5
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 1.9e-97 360.5 507 51.9
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 4.2e-97 359.4 325 61.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 4.2e-97 359.4 445 49.9
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 5.5e-97 359.0 440 54.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 5.5e-97 359.0 440 53.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.1e-96 355.5 405 56.5
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 6.1e-96 355.5 435 54.5
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 8.0e-96 355.1 443 49.9
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 8.0e-96 355.1 369 56.6
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.0e-95 354.8 396 57.8
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.4e-95 354.4 325 61.8
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.8e-95 354.0 359 58.5
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 2.3e-95 353.6 439 52.4
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.3e-95 353.6 366 59.8
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 3.0e-95 353.2 446 48.0
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.5e-94 350.9 307 62.9
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.4e-94 349.7 389 58.1
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 3.7e-93 346.3 326 59.2
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 2.4e-92 343.6 323 62.2
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 5.4e-92 342.4 391 56.8
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.7e-91 340.1 401 56.1
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.0e-90 338.2 493 45.2
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.7e-90 337.4 397 53.7
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.1e-88 330.5 453 47.2
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.1e-88 330.5 380 54.5
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.4e-87 327.8 417 53.0
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 4.0e-87 326.2 483 52.2
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.2e-86 324.7 357 55.2
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 1.2e-86 324.7 302 61.9
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.0e-86 323.9 340 58.8
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 4.4e-86 322.8 306 61.1
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 4.4e-86 322.8 295 63.7
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 5.8e-86 322.4 372 54.6
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 7.5e-86 322.0 295 63.4
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.4e-84 317.8 303 56.4
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 1.2e-83 314.7 446 54.9
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 8.6e-82 308.5 307 55.7
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.5e-81 307.8 290 59.0
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.9e-81 307.4 332 56.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.6e-80 303.1 288 60.4
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.5e-78 297.7 543 40.1
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 2.6e-78 297.0 373 51.5
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 2.6e-78 297.0 427 47.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 1.1e-76 291.6 361 53.5
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.3e-74 283.9 320 50.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.5e-73 280.4 321 50.5
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 4.0e-71 273.1 244 60.7
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 5.8e-70 269.2 254 59.4
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.7e-66 257.7 350 47.7
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.7e-66 257.7 292 51.7
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.9e-66 256.5 369 49.1
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.2e-64 251.5 387 45.7
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.2e-62 245.0 404 41.3
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 8.4e-61 238.8 286 53.5
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 7.3e-57 225.7 334 40.1
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-47 195.3 247 47.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 4.0e-47 193.4 237 51.1
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.0e-47 193.4 205 51.2
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 9.9e-46 188.7 384 40.1
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 6.7e-42 176.0 346 36.4
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 1.4e-39 168.3 416 35.3
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.5e-33 148.3 179 52.5
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.9e-33 147.9 315 34.0
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.4e-22 110.5 83 69.9
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 5.5e-20 103.2 145 47.6
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 2.7e-19 100.9 145 46.9
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 2.7e-19 100.9 145 46.9
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 6.7e-18 96.3 201 40.8
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.9e-13 80.9 149 49.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 4.4e-09 67.0 41 78.0
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 4.4e-09 67.0 41 78.0
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 4.4e-09 67.0 41 78.0
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 9.7e-09 65.9 267 24.3
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 7.0e-07 59.7 55 60.0
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 1.2e-06 58.9 62 45.2


User provided reference genes

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