Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37390 Brassica carinata HOM05D001473 ORTHO05D003934 2.2e-182 642.1 314 100.0
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 1.9e-40 170.6 193 58.5
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 1.9e-40 170.6 194 58.2
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 4.2e-40 169.5 193 58.5
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 4.2e-40 169.5 194 57.7
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 9.3e-40 168.3 206 54.9
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 1.2e-39 167.9 203 54.7
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 1.2e-39 167.9 203 54.7
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.6e-39 167.5 193 57.5
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 1.0e-38 164.9 193 57.0
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 2.3e-38 163.7 191 56.0
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 3.9e-38 162.9 206 53.9
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 3.9e-38 162.9 206 53.9
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 1.9e-37 160.6 196 55.1
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 1.9e-37 160.6 196 55.1
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 3.3e-37 159.8 182 56.0
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 4.3e-37 159.5 182 56.0
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 4.3e-37 159.5 182 56.0
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 4.3e-37 159.5 193 55.4
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.6e-36 157.5 182 54.9
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.1e-36 157.1 182 54.9
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 2.8e-36 156.8 184 54.9
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 4.8e-36 156.0 184 54.9
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 8.2e-36 155.2 207 51.7
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 1.1e-35 154.8 184 55.4
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 1.4e-35 154.5 184 54.3
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.8e-35 154.1 182 53.8
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.8e-35 154.1 182 53.8
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 2.4e-35 153.7 182 53.8
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 3.1e-35 153.3 196 53.6
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 3.1e-35 153.3 196 53.6
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 4.1e-35 152.9 184 53.3
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 4.1e-35 152.9 184 53.8
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 5.3e-35 152.5 184 53.3
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 9.0e-35 151.8 190 51.1
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 1.2e-34 151.4 184 52.7
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 1.2e-34 151.4 184 54.3
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.2e-34 151.4 184 54.3
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.2e-34 151.4 184 54.3
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.5e-34 151.0 191 50.8
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.5e-34 151.0 191 51.8
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 2.0e-34 150.6 194 51.0
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 2.6e-34 150.2 191 50.8
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 2.6e-34 150.2 184 52.7
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 2.6e-34 150.2 184 53.3
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 5.9e-34 149.1 185 52.4
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 7.6e-34 148.7 184 53.3
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 7.6e-34 148.7 184 53.3
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 1.0e-33 148.3 184 53.3
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 1.0e-33 148.3 207 50.2
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.7e-33 147.5 191 49.7
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 5.0e-33 146.0 184 50.0
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 6.5e-33 145.6 191 49.2
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 8.5e-33 145.2 184 53.3
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 1.1e-32 144.8 183 51.4
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 1.9e-32 144.1 184 52.2
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 1.9e-32 144.1 190 50.5
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 3.2e-32 143.3 201 48.3
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 3.2e-32 143.3 186 51.6
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 4.2e-32 142.9 190 49.5
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 1.2e-31 141.4 153 57.5
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 1.6e-31 141.0 209 48.3
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 1.6e-31 141.0 200 48.0
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 2.7e-31 140.2 182 52.7
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 3.6e-31 139.8 200 48.5
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 4.6e-31 139.4 201 47.3
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 7.9e-31 138.7 181 50.8
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 1.0e-30 138.3 184 48.9
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.3e-30 137.9 185 51.9
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 2.3e-30 137.1 179 50.3
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 2.3e-30 137.1 181 50.3
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 3.0e-30 136.7 183 49.7
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 3.0e-30 136.7 183 49.7
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 3.9e-30 136.3 184 47.8
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 5.1e-30 136.0 184 49.5
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 5.1e-30 136.0 184 48.9
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 6.7e-30 135.6 185 51.4
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 8.7e-30 135.2 179 49.7
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 1.1e-29 134.8 184 50.0
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 1.1e-29 134.8 194 48.5
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 1.1e-29 134.8 183 49.7
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 1.1e-29 134.8 183 49.7
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 2.5e-29 133.7 184 48.9
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 3.3e-29 133.3 205 49.3
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 4.3e-29 132.9 190 47.9
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 5.7e-29 132.5 192 46.9
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 7.4e-29 132.1 192 46.9
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.4e-29 132.1 182 51.1
Gohir.A11G247900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 7.4e-29 132.1 171 52.0
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 7.4e-29 132.1 191 46.6
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 9.7e-29 131.7 200 46.0
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.3e-28 131.3 198 46.0
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 1.6e-28 131.0 184 48.4
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-28 130.6 182 50.5
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 2.8e-28 130.2 185 49.7
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-28 130.2 185 49.7
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-28 130.2 185 49.7
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-28 130.2 185 50.8
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 3.7e-28 129.8 184 47.8
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 4.8e-28 129.4 191 47.1
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 4.8e-28 129.4 177 48.6
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.3e-28 129.0 182 50.0
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 8.2e-28 128.6 184 47.8
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.1e-27 128.3 140 59.3
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.1e-27 128.3 185 49.7
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.4e-27 127.9 192 45.3
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 2.4e-27 127.1 192 47.9
Sc03g0006690 Simmondsia chinensis HOM05D001473 ORTHO05D003934 2.4e-27 127.1 191 46.6
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 4.1e-27 126.3 188 49.5
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 5.3e-27 125.9 160 50.0
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.2e-26 124.8 182 45.6
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 3.4e-26 123.2 185 48.6
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 3.4e-26 123.2 182 45.6
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 4.5e-26 122.9 191 43.5
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 4.5e-26 122.9 182 45.6
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 4.5e-26 122.9 182 45.6
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 1.0e-25 121.7 191 45.0
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 1.0e-25 121.7 183 46.4
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 1.7e-25 120.9 186 47.3
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 1.7e-25 120.9 191 46.6
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 2.2e-25 120.6 183 48.1
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 3.8e-25 119.8 195 43.1
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 8.5e-25 118.6 191 47.1
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 1.1e-24 118.2 218 42.2
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 1.1e-24 118.2 180 47.2
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 1.1e-24 118.2 193 43.5
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 1.6e-23 114.4 191 42.4
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 5.1e-22 109.4 190 43.7
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 5.1e-22 109.4 177 44.1
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 8.8e-22 108.6 186 41.4
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.1e-21 108.2 190 41.1
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 2.6e-21 107.1 190 40.5
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 4.8e-20 102.8 182 40.7
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 1.2e-18 98.2 133 48.9
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 1.7e-17 94.4 91 65.9
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 8.5e-17 92.0 167 44.3
Sc03g0006100 Simmondsia chinensis HOM05D001473 ORTHO05D003934 2.5e-16 90.5 123 48.0
Peaxi162Scf00304g00075 Petunia axillaris HOM05D001473 ORTHO05D003934 3.0e-14 83.6 191 34.6
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 5.2e-14 82.8 194 37.6
QL10p043044 Quercus lobata HOM05D001473 ORTHO05D003934 2.6e-13 80.5 130 44.6
arahy.Tifrunner.gnm1.ann1.E23V63 Arachis hypogaea HOM05D001473 ORTHO05D003934 1.7e-12 77.8 117 48.7
CsaV3_1G045350 Cucumis sativus L. HOM05D001473 ORTHO05D003934 4.5e-10 69.7 65 64.6
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 2.7e-07 60.5 180 35.6
SMO196G0113 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.8e-06 57.8 110 40.0


User provided reference genes

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