Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 0.0e+00 1099.0 546 100.0
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 5.7e-295 1016.9 577 90.5
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 9.1e-293 1009.6 577 89.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 9.1e-293 1009.6 577 89.8
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 3.5e-292 1007.7 577 89.8
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.1e-265 918.7 577 81.3
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 8.9e-256 886.7 577 80.6
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 7.3e-250 867.1 577 76.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 6.2e-249 864.0 577 75.9
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 6.8e-248 860.5 576 75.9
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 2.3e-243 845.5 583 73.4
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 6.6e-243 844.0 576 75.0
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 6.9e-240 833.9 585 73.3
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.9e-237 825.9 615 71.5
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 3.9e-235 818.1 577 72.8
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 1.0e-227 793.5 578 70.1
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.0e-227 793.5 576 69.3
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 3.0e-227 792.0 583 68.8
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.2e-223 780.0 581 68.2
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 7.6e-223 777.3 578 69.2
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 2.9e-222 775.4 578 67.8
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.5e-221 772.3 583 67.6
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.9e-218 762.7 578 66.6
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 4.3e-218 761.5 577 66.6
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 2.1e-217 759.2 600 64.5
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 6.3e-217 757.7 578 66.6
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 8.2e-217 757.3 579 67.5
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.2e-215 753.4 579 67.7
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.5e-215 753.1 634 62.8
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 4.5e-215 751.5 579 65.3
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 4.5e-215 751.5 576 66.8
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 5.9e-215 751.1 580 66.0
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.7e-214 749.6 579 67.2
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.7e-214 749.6 579 67.4
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.2e-214 749.2 580 65.9
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 6.5e-214 747.7 580 65.9
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 8.5e-214 747.3 607 62.9
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.1e-213 746.9 587 64.7
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.2e-213 745.3 587 64.6
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.2e-213 745.0 578 67.1
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 5.5e-213 744.6 579 64.8
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 9.3e-213 743.8 590 65.4
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 9.3e-213 743.8 579 65.5
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.2e-212 743.4 590 65.4
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.6e-212 743.0 579 66.7
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 4.6e-212 741.5 578 66.3
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 1.0e-211 740.3 578 68.0
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 1.3e-211 740.0 578 66.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.8e-211 739.6 580 65.3
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.8e-211 739.6 580 65.3
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 3.0e-211 738.8 577 64.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.0e-211 738.8 593 65.1
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 3.9e-211 738.4 578 66.4
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 6.7e-211 737.6 589 65.7
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 8.7e-211 737.3 580 65.2
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.9e-210 736.1 580 65.3
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.9e-210 736.1 580 65.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.9e-210 736.1 581 65.6
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.5e-210 735.7 589 65.7
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 2.5e-210 735.7 584 64.6
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.5e-210 735.7 579 66.7
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 5.7e-210 734.6 581 64.9
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.3e-209 733.4 589 65.4
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.3e-209 733.4 589 65.7
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 2.8e-209 732.3 579 64.4
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 4.8e-209 731.5 589 64.9
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 6.3e-209 731.1 578 65.2
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.4e-208 729.2 589 65.7
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 3.1e-208 728.8 588 65.6
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 4.1e-208 728.4 534 69.3
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.2e-207 726.9 583 64.0
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.0e-207 726.1 590 64.2
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 3.4e-207 725.3 577 63.4
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.4e-207 725.3 557 66.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 7.7e-207 724.2 580 64.3
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 2.9e-206 722.2 587 64.1
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.1e-205 720.3 588 63.8
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 1.4e-203 713.4 554 65.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.1e-203 711.4 583 63.1
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.5e-202 709.9 590 62.9
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 2.6e-202 709.1 579 64.4
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.7e-201 706.4 585 62.9
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 2.2e-201 706.1 579 64.2
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 2.4e-200 702.6 509 69.9
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 4.5e-199 698.4 571 63.0
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 7.2e-197 691.0 577 61.5
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 2.3e-195 686.0 609 61.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 3.0e-195 685.6 591 60.6
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 7.4e-194 681.0 577 60.8
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.2e-193 679.5 568 64.3
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.1e-192 677.2 578 61.6
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.5e-191 671.8 578 61.2
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.4e-189 664.1 579 60.4
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.4e-187 660.2 586 59.0
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.6e-186 656.0 585 59.0
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.4e-184 650.2 716 51.7
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.8e-184 649.8 581 58.9
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.0e-182 644.0 569 61.2
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 6.5e-182 641.3 523 64.1
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 3.2e-181 639.0 582 57.7
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 7.2e-181 637.9 579 59.8
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 9.4e-181 637.5 582 58.4
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 4.7e-180 635.2 581 57.7
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 7.5e-178 627.9 598 57.7
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.7e-177 626.7 498 65.3
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.8e-176 623.2 524 61.6
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 7.0e-176 621.3 586 57.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 9.1e-176 620.9 523 62.1
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.2e-174 616.3 577 56.7
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 9.5e-173 610.9 443 68.4
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.2e-170 604.0 577 55.6
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 3.1e-168 595.9 541 59.0
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 8.3e-161 571.2 774 45.9
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 7.0e-160 568.2 584 53.8
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.6e-159 567.0 459 63.0
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.5e-157 559.7 565 55.0
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.7e-153 547.0 589 53.0
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 4.9e-153 545.4 591 50.4
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.0e-151 540.0 494 57.3
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.5e-149 533.1 468 60.5
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 2.9e-145 519.6 590 48.5
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 2.3e-142 510.0 592 47.8
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 4.3e-141 505.8 413 61.7
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 8.4e-137 491.5 385 66.5
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.1e-136 489.2 403 64.0
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 2.7e-135 486.5 489 54.4
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.5e-133 480.7 406 63.5
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 6.9e-115 418.7 576 41.7
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 9.0e-115 418.3 318 68.2
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 9.9e-114 414.8 597 41.0
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-109 401.4 826 35.2
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.4e-99 367.1 443 47.6
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.9e-99 365.5 288 64.2
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.6e-90 337.0 291 60.1
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.2e-87 328.2 311 59.2
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 9.7e-85 318.5 307 57.0
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 3.6e-79 300.1 244 64.3
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.8e-76 290.4 261 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.8e-75 287.7 402 42.8
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 2.4e-75 287.3 206 69.9
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.6e-74 283.9 266 56.0
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.3e-73 281.6 206 68.0
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 7.2e-72 275.8 206 67.5
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.7e-71 273.9 171 75.4
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.1e-67 261.9 190 67.9
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.1e-67 261.9 248 59.3
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.0e-61 241.1 578 32.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.8e-51 208.0 124 79.8
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 3.1e-51 207.2 124 80.6
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.7e-49 201.4 130 76.2
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 1.6e-47 194.9 124 76.6
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 3.6e-47 193.7 124 75.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.4e-44 183.0 146 61.0
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 3.2e-43 180.6 226 50.4
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 1.6e-42 178.3 120 71.7
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.2e-39 166.4 184 50.0
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.8e-38 164.9 145 63.4
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.0e-37 161.4 170 50.0
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.4e-37 160.2 124 62.9
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 3.3e-32 144.1 168 50.0
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 4.3e-32 143.7 248 42.7
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.1e-30 139.0 156 50.0
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.8e-30 138.3 156 48.1
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.4e-29 133.7 232 40.1
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 7.5e-29 132.9 111 62.2
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 9.9e-29 132.5 111 61.3
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 7.1e-27 126.3 85 69.4
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.0e-25 122.5 110 59.1
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 1.0e-25 122.5 159 47.8
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 5.1e-25 120.2 62 91.9
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 2.1e-18 98.2 100 50.0
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.7e-17 95.1 108 47.2
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.3e-17 94.7 79 58.2
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 7.3e-16 89.7 50 84.0
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 2.1e-15 88.2 122 43.4
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 3.6e-15 87.4 60 68.3
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.2e-15 86.7 92 51.1
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 2.0e-13 81.6 103 44.7
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 6.0e-10 70.1 46 73.9
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 1.3e-09 68.9 64 54.7
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 9.6e-08 62.8 46 73.9
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 9.6e-08 62.8 46 73.9
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 6.2e-07 60.1 47 68.1
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 6.2e-07 60.1 47 68.1
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 1.4e-06 58.9 47 68.1
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 4.0e-06 57.4 32 75.0


User provided reference genes

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