Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35093 Brassica carinata HOM05D002268 ORTHO05D006626 5.7e-83 310.8 154 100.0
BcaB06g25547 Brassica carinata HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
BcaC05g29292 Brassica carinata HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
BcaNung06701 Brassica carinata HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
A05p37270 Brassica napus HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
C05p55740 Brassica napus HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
BolC5t34241H Brassica oleracea HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
BraA05t22523Z Brassica rapa HOM05D002268 ORTHO05D006626 3.6e-53 211.8 109 99.1
Aa31sc172G20 Aethionema arabicum HOM05D002268 ORTHO05D006626 8.9e-52 207.2 109 96.3
Thhalv10020226m.g Eutrema salsugineum HOM05D002268 ORTHO05D006626 2.0e-51 206.1 109 96.3
Sp3g10310 Schrenkiella parvula HOM05D002268 ORTHO05D006626 2.6e-51 205.7 109 96.3
CARHR086640 Cardamine hirsuta HOM05D002268 ORTHO05D006626 4.9e-50 201.4 109 94.5
AT3G12080 Arabidopsis thaliana HOM05D002268 ORTHO05D006626 2.4e-49 199.1 109 91.7
Carub.0003s1142 Capsella rubella HOM05D002268 ORTHO05D006626 5.4e-49 198.0 109 90.8
AL3G23710 Arabidopsis lyrata HOM05D002268 ORTHO05D006626 2.0e-48 196.1 109 90.8
THA.LOC104799102 Tarenaya hassleriana HOM05D002268 ORTHO05D006626 4.6e-48 194.9 109 89.0
CDE10G0602 Ceratophyllum demersum HOM05D002268 ORTHO05D006626 7.5e-43 177.6 108 83.3
Cpa.g.sc84.63 Carica papaya HOM05D002268 ORTHO05D006626 1.7e-42 176.4 109 82.6
Potri.009G054200 Populus trichocarpa HOM05D002268 ORTHO05D006626 6.4e-42 174.5 109 81.7
Oeu063320.1 Olea europaea HOM05D002268 ORTHO05D006626 1.4e-41 173.3 109 80.7
HanXRQChr07g0206341 Helianthus annuus HOM05D002268 ORTHO05D006626 4.1e-41 171.8 110 81.8
MD03G1176500 Malus domestica HOM05D002268 ORTHO05D006626 4.1e-41 171.8 109 80.7
Prupe.4G247300 Prunus persica HOM05D002268 ORTHO05D006626 4.1e-41 171.8 109 80.7
Lj3g0007359 Lotus japonicus HOM05D002268 ORTHO05D006626 5.4e-41 171.4 109 80.7
TAR623G0947 Trochodendron aralioides HOM05D002268 ORTHO05D006626 5.4e-41 171.4 109 78.0
Dinv22183 Davidia involucrata HOM05D002268 ORTHO05D006626 7.1e-41 171.0 109 79.8
FAN26G2056 Fragaria x ananassa HOM05D002268 ORTHO05D006626 9.2e-41 170.6 109 79.8
Hund07516 Selenicereus undatus HOM05D002268 ORTHO05D006626 9.2e-41 170.6 106 81.1
Actinidia16328 Actinidia chinensis HOM05D002268 ORTHO05D006626 1.2e-40 170.2 109 78.9
MD11G1197100 Malus domestica HOM05D002268 ORTHO05D006626 1.2e-40 170.2 109 79.8
Nitab4.5_0005819g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006626 1.2e-40 170.2 109 78.9
Nitab4.5_0006994g0050 Nicotiana tabacum HOM05D002268 ORTHO05D006626 1.2e-40 170.2 109 78.9
RcHm_v2.0_Chr3g0490621 Rosa chinensis HOM05D002268 ORTHO05D006626 1.2e-40 170.2 109 79.8
CSS0000345 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 1.6e-40 169.9 109 78.0
CSS0030566 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 1.6e-40 169.9 109 78.0
Manes.06G165100 Manihot esculenta HOM05D002268 ORTHO05D006626 1.6e-40 169.9 109 78.0
Sabra09G0039500 Salix brachista HOM05D002268 ORTHO05D006626 1.6e-40 169.9 109 79.8
Cc07_g19630 Coffea canephora HOM05D002268 ORTHO05D006626 2.1e-40 169.5 109 79.8
PSO384G3976 Papaver somniferum HOM05D002268 ORTHO05D006626 2.7e-40 169.1 109 77.1
Migut.N02312 Erythranthe guttata HOM05D002268 ORTHO05D006626 3.5e-40 168.7 109 76.1
HPP92_014272 Vanilla planifolia HOM05D002268 ORTHO05D006626 3.5e-40 168.7 109 78.9
MSTRG.17589 Avicennia marina HOM05D002268 ORTHO05D006626 4.6e-40 168.3 109 75.2
Eucgr.J00770 Eucalyptus grandis HOM05D002268 ORTHO05D006626 4.6e-40 168.3 109 77.1
FvH4_1g30400 Fragaria vesca HOM05D002268 ORTHO05D006626 4.6e-40 168.3 109 78.9
PSO339G2962 Papaver somniferum HOM05D002268 ORTHO05D006626 4.6e-40 168.3 109 77.1
HPP92_024482 Vanilla planifolia HOM05D002268 ORTHO05D006626 4.6e-40 168.3 109 79.8
Medtr4g065030 Medicago truncatula HOM05D002268 ORTHO05D006626 6.0e-40 167.9 109 78.0
ECA233G1364 Erigeron canadensis HOM05D002268 ORTHO05D006626 7.8e-40 167.5 110 79.1
Nn7g36127 Nelumbo nucifera HOM05D002268 ORTHO05D006626 7.8e-40 167.5 109 77.1
Sc06g0006620 Simmondsia chinensis HOM05D002268 ORTHO05D006626 7.8e-40 167.5 109 77.1
arahy.Tifrunner.gnm1.ann1.DNZ7SI Arachis hypogaea HOM05D002268 ORTHO05D006626 1.0e-39 167.2 109 75.2
arahy.Tifrunner.gnm1.ann1.I6T88V Arachis hypogaea HOM05D002268 ORTHO05D006626 1.0e-39 167.2 109 75.2
Peaxi162Scf00004g02222 Petunia axillaris HOM05D002268 ORTHO05D006626 1.0e-39 167.2 109 77.1
Thecc.09G232500 Theobroma cacao HOM05D002268 ORTHO05D006626 1.0e-39 167.2 109 77.1
Atru.chr3.2734 Acer truncatum HOM05D002268 ORTHO05D006626 1.3e-39 166.8 109 77.1
CAN.G599.8 Capsicum annuum HOM05D002268 ORTHO05D006626 1.3e-39 166.8 109 76.1
SGA_v2.0_scaffold42G16106 Striga asiatica HOM05D002268 ORTHO05D006626 1.3e-39 166.8 109 76.1
ATR0605G248 Amborella trichopoda HOM05D002268 ORTHO05D006626 1.7e-39 166.4 109 76.1
Gohir.D08G024300 Gossypium hirsutum HOM05D002268 ORTHO05D006626 1.7e-39 166.4 109 78.0
Gorai.004G019700 Gossypium raimondii HOM05D002268 ORTHO05D006626 1.7e-39 166.4 109 78.0
Lsat_1_v5_gn_6_47501 Lactuca sativa HOM05D002268 ORTHO05D006626 1.7e-39 166.4 110 80.0
Psat7g212800 Pisum sativum HOM05D002268 ORTHO05D006626 1.7e-39 166.4 109 78.0
Solyc11g065870.3 Solanum lycopersicum HOM05D002268 ORTHO05D006626 1.7e-39 166.4 109 77.1
Sopen11g025600 Solanum pennellii HOM05D002268 ORTHO05D006626 1.7e-39 166.4 109 77.1
Gohir.A08G013840 Gossypium hirsutum HOM05D002268 ORTHO05D006626 2.3e-39 166.0 109 78.0
Lj1C332G7 Lonicera japonica HOM05D002268 ORTHO05D006626 2.3e-39 166.0 109 77.1
Rhsim13G0221900 Rhododendron simsii HOM05D002268 ORTHO05D006626 2.3e-39 166.0 109 74.3
Ca_11285_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 3.0e-39 165.6 109 78.0
Ca_30226_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 3.0e-39 165.6 109 78.0
vmacro04212 Vaccinium macrocarpon HOM05D002268 ORTHO05D006626 3.0e-39 165.6 109 74.3
EL10Ac4g10276 Beta vulgaris HOM05D002268 ORTHO05D006626 3.9e-39 165.2 109 77.1
Glyma.12G057600 Glycine max HOM05D002268 ORTHO05D006626 3.9e-39 165.2 109 78.0
Ah.06g194290 Amaranthus hybridus HOM05D002268 ORTHO05D006626 8.6e-39 164.1 109 77.1
EL10Ac4g10260 Beta vulgaris HOM05D002268 ORTHO05D006626 8.6e-39 164.1 109 77.1
MELO3C014599.2 Cucumis melo HOM05D002268 ORTHO05D006626 1.1e-38 163.7 109 76.1
DCAR_029948 Daucus carota HOM05D002268 ORTHO05D006626 1.1e-38 163.7 109 76.1
Sc06g0006280 Simmondsia chinensis HOM05D002268 ORTHO05D006626 1.1e-38 163.7 105 78.1
Aqoxy1G00257 Aquilegia oxysepala HOM05D002268 ORTHO05D006626 1.9e-38 162.9 109 74.3
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.9e-38 162.9 109 77.1
AUR62019293 Chenopodium quinoa HOM05D002268 ORTHO05D006626 2.5e-38 162.5 109 76.1
Phvul.011G059500 Phaseolus vulgaris HOM05D002268 ORTHO05D006626 3.3e-38 162.2 109 75.2
QL11p018105 Quercus lobata HOM05D002268 ORTHO05D006626 3.3e-38 162.2 109 74.3
Sed0009485 Sechium edule HOM05D002268 ORTHO05D006626 3.3e-38 162.2 109 75.2
Ciclev10014514m.g Citrus clementina HOM05D002268 ORTHO05D006626 5.6e-38 161.4 109 74.3
CsaV3_4G024210 Cucumis sativus L. HOM05D002268 ORTHO05D006626 5.6e-38 161.4 109 74.3
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 9.5e-38 160.6 109 75.2
TWI60G0961 Tripterygium wilfordii HOM05D002268 ORTHO05D006626 9.5e-38 160.6 109 76.1
Zm00001eb115290 Zea mays HOM05D002268 ORTHO05D006626 1.2e-37 160.2 109 72.5
Duzib170G0271 Durio zibethinus HOM05D002268 ORTHO05D006626 2.1e-37 159.5 109 73.4
Lalb_Chr03g0026321 Lupinus albus HOM05D002268 ORTHO05D006626 3.6e-37 158.7 109 73.4
arahy.Tifrunner.gnm1.ann1.HT7K3U Arachis hypogaea HOM05D002268 ORTHO05D006626 4.7e-37 158.3 108 72.2
Haze_23129 Corylus avellana HOM05D002268 ORTHO05D006626 2.3e-36 156.0 132 63.6
Cfa009764 Carpinus fangiana HOM05D002268 ORTHO05D006626 5.2e-36 154.8 109 70.6
ClCG02G023290 Citrullus lanatus HOM05D002268 ORTHO05D006626 6.8e-36 154.5 120 68.3
CiPaw.13G161600 Carya illinoinensis HOM05D002268 ORTHO05D006626 1.2e-35 153.7 109 69.7
FAN23G0767 Fragaria x ananassa HOM05D002268 ORTHO05D006626 4.4e-35 151.8 140 60.7
FAN28G1431 Fragaria x ananassa HOM05D002268 ORTHO05D006626 2.2e-34 149.4 103 74.8
unitig_699.g19128 Utricularia gibba HOM05D002268 ORTHO05D006626 6.4e-34 147.9 109 67.0
TPR.G23223 Trifolium pratense HOM05D002268 ORTHO05D006626 1.8e-28 129.8 88 77.3
Mapoly0022s0147 Marchantia polymorpha HOM05D002268 ORTHO05D006626 8.9e-28 127.5 109 56.0
TPR.G35024 Trifolium pratense HOM05D002268 ORTHO05D006626 9.9e-27 124.0 76 81.6
AagrBONN_evm.TU.Sc2ySwM_344.2875 Anthoceros agrestis HOM05D002268 ORTHO05D006626 4.2e-25 118.6 109 54.1
SMO271G0063 Selaginella moellendorffii HOM05D002268 ORTHO05D006626 9.3e-25 117.5 82 65.9
GSVIVG01025275001 Vitis vinifera HOM05D002268 ORTHO05D006626 6.6e-23 111.3 71 74.6
Pp3c11_19380 Physcomitrium patens HOM05D002268 ORTHO05D006626 1.5e-22 110.2 103 53.4
CBR_g20109 Chara braunii HOM05D002268 ORTHO05D006626 1.5e-19 100.1 89 51.7
Glyma.11G133433 Glycine max HOM05D002268 ORTHO05D006626 3.8e-18 95.5 62 79.0
SalBow5G3318 Salvia bowleyana HOM05D002268 ORTHO05D006626 9.3e-17 90.9 65 69.2
MCO02G480 Micromonas commoda HOM05D002268 ORTHO05D006626 7.9e-16 87.8 104 45.2
PRCOL_00000933 Prasinoderma coloniale HOM05D002268 ORTHO05D006626 5.1e-15 85.1 79 49.4
QL01p004794 Quercus lobata HOM05D002268 ORTHO05D006626 1.9e-14 83.2 62 69.4
Cre16.g658526 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D007891 3.1e-12 75.9 80 43.8
SEGI_19193 Sequoiadendron giganteum HOM05D002268 ORTHO05D006626 3.3e-06 55.8 62 50.0


User provided reference genes

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