Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 1.8e-30 135.2 65 100.0
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 1.8e-30 135.2 65 100.0
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 1.8e-30 135.2 65 100.0
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 1.8e-30 135.2 65 100.0
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 1.8e-30 135.2 65 100.0
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 1.5e-29 132.1 65 96.9
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 1.5e-29 132.1 65 96.9
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 1.5e-29 132.1 65 96.9
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 1.5e-29 132.1 65 96.9
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 1.5e-29 132.1 65 96.9
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 3.4e-29 131.0 65 96.9
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 7.6e-29 129.8 65 95.4
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 7.6e-29 129.8 65 95.4
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 7.6e-29 129.8 65 95.4
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 2.9e-28 127.9 65 93.8
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 2.9e-28 127.9 65 93.8
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 3.8e-28 127.5 65 93.8
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 3.8e-28 127.5 65 93.8
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 8.4e-28 126.3 65 92.3
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 8.4e-28 126.3 65 90.8
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 2.4e-27 124.8 65 90.8
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 6.0e-26 120.2 63 90.5
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 6.0e-26 120.2 93 69.9
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 1.0e-25 119.4 78 78.2
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 84.6
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 2.5e-24 114.8 65 84.6
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 3.3e-24 114.4 65 83.1
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 4.3e-24 114.0 65 83.1
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 4.3e-24 114.0 65 84.6
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 4.3e-24 114.0 65 84.6
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 84.6
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 83.1
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 7.4e-24 113.2 65 83.1
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 7.4e-24 113.2 65 83.1
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 83.1
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 81.5
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 81.5
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 81.5
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 83.1
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 83.1
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 83.1
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 83.1
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 81.5
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 83.1
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 1.3e-23 112.5 65 84.6
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 1.3e-23 112.5 65 80.0
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 1.3e-23 112.5 65 81.5
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 1.3e-23 112.5 65 81.5
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.6e-23 112.1 65 83.1
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 1.6e-23 112.1 65 81.5
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.6e-23 112.1 65 81.5
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 2.1e-23 111.7 65 81.5
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 2.1e-23 111.7 65 81.5
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 2.1e-23 111.7 65 81.5
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.1e-23 111.7 65 80.0
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 2.1e-23 111.7 65 80.0
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.1e-23 111.7 65 81.5
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 2.8e-23 111.3 65 80.0
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 2.8e-23 111.3 65 80.0
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 2.8e-23 111.3 65 81.5
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 2.8e-23 111.3 65 83.1
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 2.8e-23 111.3 65 81.5
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 81.5
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 81.5
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 80.0
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 81.5
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 4.8e-23 110.5 65 80.0
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 4.8e-23 110.5 65 80.0
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 4.8e-23 110.5 65 80.0
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 4.8e-23 110.5 65 80.0
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 4.8e-23 110.5 65 80.0
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 4.8e-23 110.5 63 84.1
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 4.8e-23 110.5 65 80.0
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 80.0
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 8.1e-23 109.8 65 81.5
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 1.1e-22 109.4 65 80.0
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 1.1e-22 109.4 65 78.5
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 1.1e-22 109.4 65 78.5
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.4e-22 109.0 65 78.5
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 1.4e-22 109.0 65 78.5
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 1.8e-22 108.6 65 78.5
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 1.8e-22 108.6 65 78.5
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 1.8e-22 108.6 65 80.0
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 1.8e-22 108.6 65 80.0
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 1.8e-22 108.6 65 80.0
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 1.8e-22 108.6 65 80.0
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.4e-22 108.2 65 80.0
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 2.4e-22 108.2 65 80.0
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.4e-22 108.2 65 80.0
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 2.4e-22 108.2 65 80.0
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.4e-22 108.2 65 80.0
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 3.1e-22 107.8 65 80.0
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 4.0e-22 107.5 65 78.5
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 4.0e-22 107.5 60 85.0
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 5.3e-22 107.1 65 78.5
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 9.0e-22 106.3 65 76.9
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 1.5e-21 105.5 62 79.0
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 76.9
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 76.9
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 76.9
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 7.6e-21 103.2 58 82.8
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 1.3e-20 102.4 60 80.0
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 1.7e-20 102.1 58 81.0
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 73.8
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 6.5e-20 100.1 87 60.9
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 8.4e-20 99.8 71 73.2
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 73.8
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 69.2
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.9e-19 98.6 87 59.8
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.6e-18 95.5 99 53.5
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 1.6e-18 95.5 65 69.2
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 2.7e-18 94.7 83 61.4
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 1.5e-16 89.0 58 70.7
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 1.3e-15 85.9 63 71.4
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 2.8e-15 84.7 61 63.9
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.8e-15 84.0 47 83.0
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 8.2e-15 83.2 116 44.8
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 1.8e-14 82.0 58 63.8
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 2.4e-14 81.6 48 79.2
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 5.9e-13 77.0 47 78.7
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 1.3e-12 75.9 59 69.5
CAN.G304.1 Capsicum annuum HOM05D005783 ORTHO05D007042 1.3e-09 65.9 64 51.6
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 5.1e-09 63.9 90 46.7
unitig_0.g159 Utricularia gibba HOM05D005783 ORTHO05D007042 3.3e-08 61.2 48 58.3
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.6e-07 58.9 45 64.4
C02p40860 Brassica napus HOM05D064626 ORTHO05D042195 4.8e-07 57.4 31 90.3
BolC2t10103H Brassica oleracea HOM05D064626 ORTHO05D042195 4.8e-07 57.4 31 90.3
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.1e-06 56.2 59 54.2
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.4e-06 55.1 43 65.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 5.3e-06 53.9 29 82.8


User provided reference genes

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