Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.9e-53 211.8 122 100.0
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 2.1e-40 169.1 122 82.0
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 2.1e-40 169.1 122 82.0
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 2.1e-40 169.1 122 82.0
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 4.9e-37 157.9 123 80.5
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 4.9e-37 157.9 109 84.4
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 7.3e-33 144.1 127 64.6
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 7.3e-33 144.1 117 73.5
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 4.9e-29 131.3 121 61.2
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 6.4e-29 131.0 125 68.0
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 3.5e-27 125.2 123 62.6
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 3.5e-27 125.2 123 62.6
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 7.8e-27 124.0 122 64.8
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.7e-26 122.9 106 69.8
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 3.9e-26 121.7 122 55.7
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.1e-25 120.2 146 56.2
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 2.5e-25 119.0 123 65.0
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 4.3e-25 118.2 126 54.0
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 9.6e-25 117.1 123 62.6
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 9.6e-25 117.1 121 56.2
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 2.1e-24 115.9 121 57.0
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.8e-24 115.5 114 57.0
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 3.6e-24 115.2 115 57.4
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 8.1e-24 114.0 130 52.3
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 8.1e-24 114.0 127 52.0
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 1.1e-23 113.6 125 52.0
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.4e-23 113.2 129 54.3
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 2.4e-23 112.5 120 53.3
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 2.4e-23 112.5 128 54.7
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 2.4e-23 112.5 125 52.8
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 4.0e-23 111.7 125 52.0
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 4.0e-23 111.7 122 52.5
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 5.3e-23 111.3 128 48.4
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 5.3e-23 111.3 120 50.8
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 6.9e-23 110.9 114 51.8
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 6.9e-23 110.9 114 51.8
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 6.9e-23 110.9 134 50.0
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 6.9e-23 110.9 120 56.7
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 1.2e-22 110.2 127 48.0
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 2.0e-22 109.4 121 49.6
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 2.6e-22 109.0 127 52.0
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 3.4e-22 108.6 126 51.6
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 4.4e-22 108.2 113 51.3
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 4.4e-22 108.2 113 50.4
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 5.8e-22 107.8 128 48.4
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 7.6e-22 107.5 124 51.6
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 7.6e-22 107.5 123 50.4
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 9.9e-22 107.1 113 53.1
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 9.9e-22 107.1 116 50.0
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 9.9e-22 107.1 126 50.0
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.3e-21 106.7 131 46.6
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.3e-21 106.7 122 50.8
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.3e-21 106.7 115 53.0
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.7e-21 106.3 124 50.8
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 2.2e-21 105.9 122 50.8
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 2.2e-21 105.9 117 50.4
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 2.2e-21 105.9 128 49.2
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.9e-21 105.5 122 59.8
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 3.8e-21 105.1 122 51.6
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.4e-21 104.4 124 50.8
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 8.4e-21 104.0 134 44.8
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 1.1e-20 103.6 122 50.8
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 1.4e-20 103.2 120 47.5
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.4e-20 103.2 113 53.1
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 3.2e-20 102.1 127 48.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 5.4e-20 101.3 111 51.4
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 5.4e-20 101.3 112 58.9
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 7.1e-20 100.9 112 57.1
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 1.2e-19 100.1 116 48.3
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 1.6e-19 99.8 108 63.9
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 1.6e-19 99.8 118 46.6
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 2.1e-19 99.4 127 46.5
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 2.7e-19 99.0 117 62.4
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 2.7e-19 99.0 111 50.5
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 4.6e-19 98.2 122 50.0
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 4.6e-19 98.2 124 50.0
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 4.6e-19 98.2 116 48.3
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 6.0e-19 97.8 113 48.7
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 1.0e-18 97.1 123 50.4
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.7e-18 96.3 115 55.7
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 2.3e-18 95.9 111 45.9
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.1e-18 94.7 129 43.4
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.1e-18 94.7 130 43.8
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.5e-17 93.2 109 48.6
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.5e-17 92.4 113 46.0
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.5e-17 92.4 114 46.5
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 3.3e-17 92.0 114 54.4
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 4.3e-17 91.7 115 53.9
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 7.3e-17 90.9 84 57.1
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.3e-16 90.1 121 43.0
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.2e-16 87.8 122 48.4
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.4e-15 86.7 128 43.0
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 1.4e-15 86.7 121 42.1
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 2.4e-15 85.9 118 52.5
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 3.1e-15 85.5 125 43.2
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.2e-14 83.6 120 41.7
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 1.3e-13 80.1 108 40.7
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 3.8e-13 78.6 66 56.1
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 3.8e-13 78.6 67 55.2
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 3.8e-13 78.6 60 61.7
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 6.4e-13 77.8 104 44.2
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.4e-12 76.6 56 67.9
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 1.4e-12 76.6 126 39.7
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.6e-11 73.2 71 56.3
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 2.1e-11 72.8 60 60.0
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 2.7e-11 72.4 63 57.1
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 2.7e-11 72.4 63 57.1
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 7.9e-11 70.9 103 40.8
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.3e-10 70.1 178 32.0
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 5.1e-10 68.2 115 45.2
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 8.7e-10 67.4 101 39.6
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.1e-08 62.8 130 35.4
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.4e-07 60.1 41 75.6
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 6.9e-07 57.8 51 49.0
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 1.2e-06 57.0 52 46.2
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.2e-06 57.0 72 44.4
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.5e-06 56.6 59 47.5
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 2.0e-06 56.2 43 67.4
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 2.6e-06 55.8 49 49.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 3.4e-06 55.5 55 47.3
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 3.4e-06 55.5 64 43.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 4.5e-06 55.1 59 45.8
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 4.5e-06 55.1 59 45.8
AUR62030216 Chenopodium quinoa HOM05D005384 ORTHO05D006477 4.5e-06 55.1 64 42.2
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 4.5e-06 55.1 64 40.6
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 4.5e-06 55.1 59 47.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 4.5e-06 55.1 59 47.5
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 4.5e-06 55.1 81 39.5
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 4.5e-06 55.1 49 49.0
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 5.8e-06 54.7 29 86.2
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 5.8e-06 54.7 59 47.5
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 5.8e-06 54.7 49 46.9
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.8e-06 54.7 81 39.5
Pp3c20_21810 Physcomitrium patens HOM05D005384 ORTHO05D006477 5.8e-06 54.7 68 38.2
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 5.8e-06 54.7 68 41.2
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 5.8e-06 54.7 49 46.9
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 5.8e-06 54.7 45 46.7
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 7.6e-06 54.3 49 46.9
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 7.6e-06 54.3 65 40.0
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 7.6e-06 54.3 59 47.5
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 7.6e-06 54.3 49 46.9
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 7.6e-06 54.3 59 45.8
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 7.6e-06 54.3 64 42.2
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 7.6e-06 54.3 63 42.9
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 7.6e-06 54.3 59 47.5
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 7.6e-06 54.3 49 46.9
AagrBONN_evm.TU.Sc2ySwM_228.1178 Anthoceros agrestis HOM05D005384 ORTHO05D006477 1.0e-05 53.9 68 36.8
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 1.0e-05 53.9 59 45.8
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.0e-05 53.9 59 45.8
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.0e-05 53.9 64 42.2
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.0e-05 53.9 64 42.2
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 1.0e-05 53.9 63 42.9
AUR62027521 Chenopodium quinoa HOM05D005384 ORTHO05D006477 1.0e-05 53.9 64 40.6
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.0e-05 53.9 51 49.0


User provided reference genes

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