Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1422.1 718 100.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1385.2 718 97.9
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1366.3 736 95.2
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1365.9 721 96.7
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1365.9 721 96.7
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1327.8 734 93.2
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1312.0 728 92.4
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1306.2 706 95.2
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1286.6 726 90.9
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1275.0 728 89.8
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1271.1 726 90.2
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1269.6 726 89.9
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1208.0 735 86.1
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1156.7 710 83.5
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1121.7 674 83.4
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1119.4 643 85.5
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1119.4 662 84.9
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1119.0 640 86.4
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1115.9 646 85.1
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 655 84.1
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1110.9 664 82.8
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1110.5 630 87.1
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1109.7 692 82.1
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1109.4 720 79.2
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 706 80.5
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 708 79.4
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 655 84.0
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 635 86.3
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 710 80.0
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1105.1 690 80.7
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1105.1 685 81.5
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1104.4 744 77.3
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1102.8 744 77.2
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1099.7 671 82.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1098.6 680 80.9
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1098.6 691 80.6
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1098.6 705 79.0
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1098.2 630 86.3
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1097.0 630 86.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1095.9 650 83.4
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 715 77.6
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 646 83.9
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1094.7 697 79.3
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 703 79.8
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 703 79.9
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 681 80.9
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1092.8 663 81.9
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 690 80.6
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 703 79.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1090.5 680 80.1
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 630 85.7
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 697 79.3
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1088.6 630 86.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 630 85.2
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1086.2 733 76.9
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1085.1 657 82.6
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 753 75.2
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1080.5 695 79.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1080.1 751 75.1
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1079.3 729 76.8
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1077.0 634 84.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1076.6 684 78.8
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1076.2 670 81.2
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.5e-311 1072.4 633 82.8
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 1.1e-309 1066.2 638 83.4
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.4e-309 1065.8 776 71.9
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.4e-309 1065.8 776 71.9
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 4.1e-309 1064.3 640 81.9
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 5.4e-309 1063.9 642 81.5
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 7.0e-309 1063.5 657 80.1
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 8.0e-305 1050.0 639 82.3
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 8.9e-304 1046.6 713 75.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 5.7e-303 1043.9 698 75.1
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 4.9e-302 1040.8 708 76.7
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.4e-301 1038.5 677 78.3
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.7e-300 1035.0 706 75.6
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 4.6e-300 1034.2 692 77.2
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 4.9e-294 1014.2 678 75.7
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 5.4e-293 1010.7 643 79.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 7.0e-293 1010.4 879 62.8
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 2.3e-291 1005.4 697 75.2
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.1e-289 998.8 739 71.4
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.4e-288 996.1 679 73.3
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 3.5e-284 981.5 663 77.1
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.6e-281 972.6 710 71.4
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 5.8e-279 964.1 634 75.4
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 7.3e-274 947.2 565 83.4
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.9e-266 922.5 602 75.2
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.2e-260 903.3 525 85.5
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 4.6e-260 901.4 628 73.7
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 3.9e-259 898.3 565 82.1
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 9.6e-258 893.6 547 83.5
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 2.8e-257 892.1 522 84.7
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 3.6e-257 891.7 527 83.5
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 9.0e-256 887.1 526 82.1
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.7e-254 882.9 623 70.5
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.4e-253 879.8 526 82.5
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.2e-247 860.1 597 73.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.4e-247 858.6 575 75.8
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 5.1e-243 844.7 625 67.8
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.6e-228 796.6 442 88.2
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.4e-227 793.5 466 84.3
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 8.5e-222 774.2 610 64.6
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.5e-205 719.5 504 73.4
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.9e-190 669.5 383 84.3
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 3.3e-181 639.4 404 80.0
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 6.2e-180 635.2 396 79.0
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.6e-175 620.5 354 85.0
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.4e-168 597.4 403 74.2
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 4.0e-147 526.2 314 83.4
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 1.3e-142 511.1 382 73.3
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.6e-135 487.6 449 60.1
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.0e-130 470.7 606 43.1
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 4.8e-124 449.5 334 73.4
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 2.0e-122 444.1 640 40.0
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.4e-107 394.8 661 37.8
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-103 381.7 535 43.4
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 3.6e-103 380.2 352 59.1
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.2e-84 317.8 216 75.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 3.6e-79 300.4 161 90.7
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 6.1e-71 273.1 161 83.2
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.0e-57 229.2 193 61.7
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.0e-57 226.9 166 64.5
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 2.9e-52 211.1 157 72.6
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 7.6e-45 186.4 104 90.4
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.7e-41 175.3 230 46.1
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 8.1e-39 166.4 105 75.2
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 4.0e-38 164.1 182 47.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.0e-37 161.8 106 75.5
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 4.4e-37 160.6 175 53.1
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 5.1e-33 147.1 114 65.8
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 4.3e-32 144.1 83 83.1
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 2.1e-31 141.7 97 73.2
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 1.4e-30 139.0 71 83.1
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.4e-30 139.0 70 94.3
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-26 125.9 138 51.4
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.8e-22 112.1 87 65.5
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.6e-21 108.2 96 57.3
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 2.6e-21 108.2 85 64.7
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 6.0e-18 97.1 75 68.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.0e-17 96.3 73 65.8
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 3.3e-16 91.3 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 8.2e-15 86.7 48 77.1
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.9e-12 77.4 78 57.7


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