Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32047 Brassica carinata HOM05D008570 ORTHO05D005639 1.6e-85 320.1 270 100.0
BolC5t30605H Brassica oleracea HOM05D008570 ORTHO05D005639 1.1e-60 237.7 277 83.8
BcaC05g25955 Brassica carinata HOM05D008570 ORTHO05D005639 2.4e-60 236.5 275 84.7
C05p19040 Brassica napus HOM05D008570 ORTHO05D005639 2.4e-60 236.5 275 84.7
BraA06t24754Z Brassica rapa HOM05D008570 ORTHO05D005639 4.1e-60 235.7 278 83.1
BNapus_Darmor_BZH_scaffold_170p00020 Brassica napus HOM05D008570 ORTHO05D005639 4.5e-51 205.7 193 85.0
Sp1g18160 Schrenkiella parvula HOM05D008570 ORTHO05D005639 7.2e-49 198.4 275 67.3
Thhalv10008313m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.0e-38 163.7 281 65.5
BolC7t42843H Brassica oleracea HOM05D008570 ORTHO05D005639 1.4e-36 157.5 199 70.4
A07p15670 Brassica napus HOM05D008570 ORTHO05D005639 5.4e-36 155.6 198 69.2
A07p15780 Brassica napus HOM05D008570 ORTHO05D005639 5.4e-36 155.6 198 69.2
BcaNung03383 Brassica carinata HOM05D008570 ORTHO05D005639 7.0e-36 155.2 273 63.4
C07p23020 Brassica napus HOM05D008570 ORTHO05D005639 7.0e-36 155.2 273 63.4
Carub.0001s1992 Capsella rubella HOM05D008570 ORTHO05D005639 7.0e-36 155.2 194 70.6
BraA07t29305Z Brassica rapa HOM05D008570 ORTHO05D005639 3.5e-35 152.9 198 68.7
BcaB03g14320 Brassica carinata HOM05D008570 ORTHO05D005639 3.9e-34 149.4 273 60.4
AT1G20450 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 3.6e-32 142.9 273 64.5
AL1G33380 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 5.2e-31 139.0 265 65.3
CARHR020900 Cardamine hirsuta HOM05D008570 ORTHO05D005639 4.9e-21 105.9 190 55.8
Carub.0001s1991 Capsella rubella HOM05D008570 ORTHO05D005639 1.1e-20 104.8 215 51.6
AL1G33370 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 2.4e-20 103.6 194 57.7
AT1G20440 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 9.2e-20 101.7 285 51.9
THA.LOC104809672 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 8.6e-18 95.1 173 54.9
BcaC08g47283 Brassica carinata HOM05D008570 ORTHO05D005639 2.1e-16 90.5 187 49.7
BolC6t40053H Brassica oleracea HOM05D008570 ORTHO05D005639 2.1e-16 90.5 187 49.7
Carub.0002s2307 Capsella rubella HOM05D008570 ORTHO05D005639 1.1e-15 88.2 194 51.5
A07p28610 Brassica napus HOM05D008570 ORTHO05D005639 5.2e-15 85.9 195 51.8
BolC2t09364H Brassica oleracea HOM05D008570 ORTHO05D005639 3.4e-14 83.2 189 51.9
CARHR069730 Cardamine hirsuta HOM05D008570 ORTHO05D005639 1.4e-12 77.8 178 51.1
C02p33360 Brassica napus HOM05D008570 ORTHO05D005639 4.1e-12 76.3 189 49.7
Sp5g31320 Schrenkiella parvula HOM05D008570 ORTHO05D005639 1.2e-11 74.7 83 57.8
AL2G36240 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 4.6e-11 72.8 164 53.0
BraA07t31704Z Brassica rapa HOM05D008570 ORTHO05D005639 6.0e-11 72.4 187 51.9
THA.LOC104813763 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 6.0e-11 72.4 72 59.7
A07p41750 Brassica napus HOM05D008570 ORTHO05D005639 1.0e-10 71.6 187 53.5
Thhalv10008706m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 1.0e-10 71.6 196 42.9
C06p50130 Brassica napus HOM05D008570 ORTHO05D005639 2.3e-10 70.5 192 53.1
BcaC08g47112 Brassica carinata HOM05D008570 ORTHO05D005639 3.9e-10 69.7 190 53.2
AT1G76180 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.5e-09 67.8 98 56.1
BraA02t07079Z Brassica rapa HOM05D008570 ORTHO05D005639 1.5e-09 67.8 189 55.0
A02p20480 Brassica napus HOM05D008570 ORTHO05D005639 3.3e-09 66.6 189 54.5
C06p32190 Brassica napus HOM05D008570 ORTHO05D005639 5.6e-09 65.9 191 52.9
Thhalv10019152m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.1e-08 63.9 174 55.2
BcaB05g24972 Brassica carinata HOM05D008570 ORTHO05D005639 3.6e-08 63.2 191 53.4
Aa31LG4G6290 Aethionema arabicum HOM05D008570 ORTHO05D005639 8.1e-08 62.0 194 51.5
Manes.05G140400 Manihot esculenta HOM05D008201 ORTHO05D005639 8.1e-08 62.0 97 50.5
Aa31LG7G4750 Aethionema arabicum HOM05D008570 ORTHO05D059195 1.4e-07 61.2 52 69.2
TPR.G32200 Trifolium pratense HOM05D015205 ORTHO05D005639 2.4e-07 60.5 196 41.3
Medtr3g117290 Medicago truncatula HOM05D015205 ORTHO05D005639 3.4e-06 56.6 175 41.7


User provided reference genes

Program Settings