Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 0.0e+00 1179.9 577 100.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 0.0e+00 1082.8 582 92.3
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 0.0e+00 1080.1 582 92.4
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 0.0e+00 1079.7 581 92.4
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 2.2e-305 1051.6 581 90.7
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 8.4e-305 1049.7 580 90.7
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 2.8e-300 1034.6 585 87.9
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 2.6e-298 1028.1 585 87.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 8.2e-268 926.8 585 78.3
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 5.9e-266 920.6 583 77.0
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 2.5e-264 915.2 585 77.8
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 2.0e-261 905.6 584 75.0
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 1.2e-253 879.8 543 78.6
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 4.5e-250 867.8 586 72.9
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 4.6e-234 814.7 598 65.4
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.3e-233 813.1 597 64.2
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 4.3e-232 808.1 598 64.7
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.2e-231 806.6 596 65.8
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 1.2e-229 800.0 597 63.8
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.5e-229 799.7 598 64.7
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 1.5e-229 799.7 595 64.2
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.0e-229 799.3 595 63.9
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 8.3e-228 793.9 595 64.4
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 1.1e-227 793.5 595 63.7
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 4.1e-227 791.6 595 64.5
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 5.4e-227 791.2 595 63.5
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 9.2e-227 790.4 595 62.5
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.0e-226 789.3 595 64.2
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 3.5e-226 788.5 590 63.9
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.7e-225 786.2 595 63.2
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.9e-225 785.0 590 63.4
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 7.3e-224 780.8 595 62.9
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 9.5e-224 780.4 595 62.9
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 2.1e-223 779.2 595 62.4
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 6.2e-223 777.7 597 62.6
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.8e-222 776.2 595 63.0
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 5.2e-222 774.6 596 61.6
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 2.0e-221 772.7 591 63.5
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 7.5e-221 770.8 594 62.5
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 1.3e-220 770.0 598 62.5
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.9e-219 766.1 598 61.5
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 5.4e-219 764.6 594 62.1
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.2e-218 763.5 595 62.4
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 6.0e-218 761.1 583 63.1
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.3e-217 760.0 597 60.5
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 2.3e-217 759.2 608 60.9
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 8.6e-217 757.3 594 61.8
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.3e-216 755.4 597 62.0
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 5.6e-216 754.6 590 61.2
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.2e-215 753.4 587 62.4
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.6e-215 753.1 586 62.3
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 2.8e-215 752.3 585 61.9
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 3.6e-215 751.9 600 60.5
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 8.1e-215 750.7 597 61.3
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.1e-214 750.4 597 63.0
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 1.4e-214 750.0 630 59.4
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 1.8e-214 749.6 582 62.9
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 3.1e-214 748.8 634 58.5
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.2e-213 746.9 597 61.5
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.3e-212 743.4 594 60.6
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 2.4e-211 739.2 591 60.4
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.6e-210 736.5 669 55.9
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.0e-209 733.8 635 58.3
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 3.9e-209 731.9 615 59.5
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 5.1e-209 731.5 591 61.1
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.9e-208 729.6 591 60.9
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.6e-205 719.2 599 60.8
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.3e-204 716.8 647 56.9
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 5.4e-203 711.4 555 62.0
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.5e-202 708.8 597 59.6
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 6.0e-202 708.0 598 58.9
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 6.0e-202 708.0 589 60.1
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.0e-201 705.7 597 59.1
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 5.1e-201 704.9 571 59.4
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 7.3e-200 701.0 594 58.6
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 9.6e-200 700.7 581 59.0
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 9.9e-197 690.6 575 59.7
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 3.8e-196 688.7 601 58.7
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 8.4e-196 687.6 589 57.4
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 6.7e-193 677.9 604 58.4
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.5e-192 676.8 544 61.6
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 7.4e-192 674.5 538 61.3
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 5.8e-189 664.8 520 62.9
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.3e-188 663.7 589 56.5
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.7e-186 656.0 686 51.6
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 2.7e-186 656.0 579 57.5
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 6.7e-185 651.4 535 60.2
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 4.8e-183 645.2 592 53.5
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 1.5e-181 640.2 611 54.0
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.0e-180 637.5 504 61.9
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.7e-180 636.7 572 56.3
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.4e-179 633.6 518 60.8
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 7.4e-176 621.3 606 55.0
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 4.8e-175 618.6 654 49.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.5e-171 606.3 486 61.5
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.4e-145 520.8 517 51.6
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 5.3e-142 508.8 606 46.4
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 3.8e-132 476.1 580 44.5
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 9.2e-126 454.9 447 50.1
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 3.8e-124 449.5 380 56.6
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 9.2e-118 428.3 393 54.5
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 1.2e-90 338.2 518 40.0
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 3.6e-90 336.7 235 67.2
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-74 283.5 597 32.3
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 3.2e-70 270.4 205 65.4
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 4.6e-69 266.5 293 48.5
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 4.8e-66 256.5 243 49.4
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.2e-47 194.5 167 55.7
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 4.7e-29 133.7 126 47.6
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.0e-28 131.0 130 52.3
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 3.4e-27 127.5 163 44.8
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 8.3e-26 122.9 81 63.0
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 1.8e-25 121.7 99 59.6
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 8.0e-21 106.3 65 66.2
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 9.8e-19 99.4 303 26.7
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 3.3e-14 84.3 54 72.2
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 4.4e-11 73.9 73 47.9
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 4.9e-10 70.5 382 23.3
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 1.1e-09 69.3 421 22.1
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 2.4e-09 68.2 438 21.7
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 4.1e-09 67.4 384 23.2
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 4.1e-09 67.4 372 21.2
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 5.4e-09 67.0 383 22.5
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 7.0e-09 66.6 385 23.1
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 7.0e-09 66.6 391 22.5
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 9.2e-09 66.2 380 21.8
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 1.2e-08 65.9 381 22.0
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.2e-08 65.9 438 22.4
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 2.0e-08 65.1 377 21.5
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 2.0e-08 65.1 381 22.3
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.7e-08 64.7 384 22.4
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 2.7e-08 64.7 388 21.6
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 2.7e-08 64.7 426 22.3
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 3.5e-08 64.3 381 21.8
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 3.5e-08 64.3 438 22.4
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 3.5e-08 64.3 350 22.3
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 3.5e-08 64.3 450 20.7
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 3.5e-08 64.3 426 22.3
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 3.5e-08 64.3 426 22.3
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 3.5e-08 64.3 381 21.8
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 4.5e-08 63.9 384 21.4
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 4.5e-08 63.9 385 22.1
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 5.9e-08 63.5 391 21.7
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 5.9e-08 63.5 370 21.4
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 7.8e-08 63.2 383 21.7
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 7.8e-08 63.2 438 22.1
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 7.8e-08 63.2 385 21.3
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.0e-07 62.8 442 21.0
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 1.0e-07 62.8 374 21.1
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.3e-07 62.4 365 21.9
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 1.3e-07 62.4 346 22.0
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 1.7e-07 62.0 370 21.4
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.3e-07 61.6 408 21.3
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 2.3e-07 61.6 361 21.9
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 2.3e-07 61.6 379 22.2
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 2.3e-07 61.6 377 22.3
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 2.3e-07 61.6 412 22.8
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 2.9e-07 61.2 435 21.8
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 2.9e-07 61.2 381 21.5
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 3.9e-07 60.8 430 21.9
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 3.9e-07 60.8 381 21.3
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 3.9e-07 60.8 442 21.3
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 3.9e-07 60.8 384 22.9
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 6.6e-07 60.1 389 21.1
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 6.6e-07 60.1 383 23.2
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 6.6e-07 60.1 38 63.2
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 6.6e-07 60.1 358 21.2
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 8.6e-07 59.7 64 51.6
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 8.6e-07 59.7 414 20.3
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 8.6e-07 59.7 387 22.0
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 8.6e-07 59.7 442 19.7
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 1.1e-06 59.3 352 21.6
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.5e-06 58.9 386 20.5
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-06 58.5 41 63.4
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 2.5e-06 58.2 355 20.8
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 2.5e-06 58.2 384 23.4
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 2.5e-06 58.2 57 47.4
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.5e-06 58.2 364 21.7
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 3.3e-06 57.8 32 84.4
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 3.3e-06 57.8 384 23.2
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 3.3e-06 57.8 387 22.2
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 3.3e-06 57.8 301 23.3
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 7.3e-06 56.6 384 23.2
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 7.3e-06 56.6 384 23.2
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 9.5e-06 56.2 387 22.2


User provided reference genes

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