Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 2.1e-146 522.3 265 100.0
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 6.1e-117 424.5 277 83.8
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 6.1e-117 424.5 276 83.7
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.0e-116 423.7 277 82.7
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.8e-116 422.9 277 83.8
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 2.3e-116 422.5 276 83.7
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.3e-115 418.7 277 83.0
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 3.3e-115 418.7 277 81.9
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 5.7e-115 417.9 276 81.9
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 2.2e-114 416.0 275 81.5
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.7e-114 415.2 278 81.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.1e-113 413.7 290 79.0
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 5.9e-112 407.9 275 80.0
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 5.0e-111 404.8 277 79.4
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 8.5e-111 404.1 275 79.6
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 8.5e-111 404.1 276 79.0
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.5e-111 404.1 275 79.6
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 1.1e-110 403.7 277 80.1
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.5e-110 403.3 275 78.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 4.2e-110 401.7 277 79.4
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.3e-106 390.2 274 77.4
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 3.5e-104 382.1 322 69.3
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 1.3e-103 380.2 280 76.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 6.8e-100 367.9 275 72.4
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.3e-98 363.6 275 71.6
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.7e-98 363.2 275 70.9
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.8e-97 359.8 275 70.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 7.0e-97 357.8 275 69.8
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 9.1e-97 357.5 268 71.3
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.2e-96 357.1 275 69.8
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-96 356.7 275 70.2
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-96 356.7 275 70.2
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 2.7e-96 355.9 277 70.0
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.5e-96 355.1 275 70.2
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 4.5e-96 355.1 275 68.7
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 5.9e-96 354.8 237 82.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.7e-95 353.2 275 68.4
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.3e-95 352.8 274 68.2
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 3.8e-95 352.1 275 68.0
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.8e-95 352.1 275 68.7
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.8e-95 352.1 275 68.7
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.8e-95 352.1 275 69.1
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.0e-95 351.7 275 69.5
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.6e-95 350.9 275 67.6
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 8.6e-95 350.9 275 67.3
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.1e-94 350.5 275 66.9
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.5e-94 350.1 275 68.4
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.5e-94 350.1 275 68.4
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 4.2e-94 348.6 268 74.6
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 4.2e-94 348.6 277 67.9
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 9.5e-94 347.4 277 68.2
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 9.5e-94 347.4 277 66.1
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.6e-93 346.7 271 70.5
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.6e-93 346.7 237 79.7
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.6e-93 346.7 275 66.2
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.1e-93 346.3 266 68.4
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 2.8e-93 345.9 266 68.4
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.6e-93 345.5 275 66.2
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 3.6e-93 345.5 275 66.2
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 4.7e-93 345.1 275 68.0
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.0e-92 344.0 277 66.1
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 5.2e-92 341.7 278 65.5
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 5.2e-92 341.7 275 67.3
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.8e-92 341.3 275 66.9
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.9e-92 340.9 275 66.5
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.9e-92 340.9 275 66.5
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 8.9e-92 340.9 275 64.0
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.6e-91 339.3 275 64.4
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 2.6e-91 339.3 288 64.6
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 9.8e-91 337.4 285 64.9
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 9.8e-91 337.4 275 64.0
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.8e-91 337.4 277 64.3
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 9.8e-91 337.4 275 65.8
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.3e-90 337.0 276 64.9
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.7e-90 336.7 299 63.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.2e-90 336.3 277 66.4
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 6.3e-90 334.7 278 65.5
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 1.4e-89 333.6 276 64.9
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.4e-89 333.6 275 64.7
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.8e-89 333.2 275 64.4
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 7.0e-89 331.3 273 63.0
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.2e-88 330.5 277 64.6
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.2e-88 330.5 277 64.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.6e-88 330.1 269 63.6
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 7.8e-88 327.8 275 64.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 7.8e-88 327.8 279 63.8
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.3e-87 326.2 287 62.7
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 2.9e-87 325.9 277 65.0
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 5.0e-87 325.1 270 64.4
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 2.5e-86 322.8 275 62.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 5.6e-86 321.6 334 55.4
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 5.6e-86 321.6 276 64.1
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 9.5e-86 320.9 277 63.9
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.2e-85 320.5 277 64.6
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.6e-85 320.1 275 63.3
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-85 319.3 291 61.2
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 8.0e-85 317.8 275 62.9
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.8e-84 316.6 278 61.5
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 2.3e-84 316.2 275 62.5
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 5.2e-84 315.1 275 64.0
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 5.2e-84 315.1 304 59.2
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 6.8e-84 314.7 310 57.7
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 6.8e-84 314.7 310 57.7
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 8.9e-84 314.3 297 57.6
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.2e-83 313.9 275 64.0
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 2.0e-83 313.2 260 66.2
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.6e-83 312.8 275 63.3
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 4.4e-83 312.0 271 63.8
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 6.4e-82 308.1 275 63.3
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.4e-81 306.2 344 52.0
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.4e-81 306.2 271 63.8
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 4.1e-81 305.4 240 68.3
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 9.2e-81 304.3 270 60.4
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 9.2e-81 304.3 279 60.9
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.0e-80 303.1 277 58.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.6e-80 302.0 270 60.0
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 7.8e-80 301.2 237 68.8
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 1.7e-79 300.1 277 61.0
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.3e-79 299.7 258 61.6
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 4.3e-78 295.4 266 62.0
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.3e-76 289.7 335 52.2
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.2e-76 288.5 235 67.2
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 9.2e-73 277.7 240 63.8
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 9.2e-73 277.7 272 57.7
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.6e-72 276.9 234 62.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 2.7e-72 276.2 278 56.1
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-71 272.7 284 55.6
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 6.2e-69 265.0 359 47.1
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.8e-68 263.5 245 59.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.0e-67 260.0 278 54.3
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 9.9e-67 257.7 234 61.5
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 2.7e-64 249.6 228 63.2
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 3.5e-64 249.2 272 53.7
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 3.3e-62 242.7 341 46.0
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 4.3e-62 242.3 277 54.2
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.6e-61 239.2 177 68.9
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 8.1e-61 238.0 163 79.1
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.2e-60 235.3 289 50.5
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 5.8e-59 231.9 263 50.6
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.3e-58 230.7 200 63.0
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 5.4e-57 225.3 156 78.8
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 2.1e-56 223.4 235 54.0
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 4.6e-56 222.2 267 48.7
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.3e-55 219.9 279 47.7
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.0e-55 219.5 274 49.3
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 8.7e-55 218.0 176 67.0
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.5e-54 217.2 266 50.4
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.0e-51 206.8 206 59.7
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 1.7e-50 203.8 183 63.4
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.8e-50 202.6 174 62.1
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 2.4e-49 199.9 160 63.1
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 5.4e-49 198.7 274 46.4
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 4.6e-48 195.7 140 70.0
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.0e-47 194.5 232 50.0
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-45 187.6 128 75.0
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 6.9e-44 181.8 223 50.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.4e-43 179.5 258 44.6
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.3e-42 177.6 165 58.2
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.4e-41 174.1 146 64.4
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 7.9e-40 168.3 133 67.7
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 6.7e-39 165.2 239 43.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.1e-37 160.2 208 47.1
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.5e-34 148.7 210 47.1
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.0e-31 139.8 142 52.1
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.3e-26 124.4 89 69.7
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-25 120.6 131 55.0
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.6e-24 115.9 92 66.3
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.3e-22 109.8 136 52.2
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 7.4e-22 108.6 214 37.4
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.2e-21 107.1 152 40.1
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.1e-20 104.8 180 40.6
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.0e-20 101.7 163 41.7
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.0e-19 100.5 72 70.8
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.5e-17 92.4 74 68.9
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 8.8e-15 85.1 72 59.7
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.3e-10 71.2 140 35.0
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 5.0e-10 69.3 70 51.4
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.5e-09 65.9 34 85.3
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.3e-07 60.5 129 34.9
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 2.0e-06 57.4 40 72.5
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.3e-06 56.6 41 70.7


User provided reference genes

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