Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1213.7 626 100.0
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1081.2 625 90.4
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1077.8 625 89.8
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 7.5e-307 1056.6 624 88.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-305 1052.4 624 87.8
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.1e-305 1051.2 624 87.7
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.7e-304 1048.1 624 88.0
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.9e-304 1047.0 624 87.5
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.9e-304 1047.0 624 87.5
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.9e-304 1047.0 624 87.5
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 3.8e-303 1044.3 626 87.2
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.6e-299 1031.6 623 86.2
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 4.4e-299 1030.8 624 86.1
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.9e-295 1018.1 623 85.4
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 4.0e-292 1007.7 624 84.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 6.2e-285 983.8 624 81.6
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.2e-272 943.0 626 78.0
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.1e-272 942.2 626 78.6
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 7.8e-264 913.7 623 76.4
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 5.6e-262 907.5 622 75.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.7e-261 904.4 623 74.6
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.1e-260 903.3 623 75.8
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.9e-258 895.2 623 74.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.9e-258 894.4 615 74.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 3.2e-257 891.7 621 73.8
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 4.6e-256 887.9 616 74.4
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.8e-256 887.1 624 74.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.0e-255 885.2 621 73.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 5.6e-254 880.9 622 73.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 9.6e-254 880.2 627 73.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 9.6e-254 880.2 614 73.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.3e-253 879.8 626 73.2
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.6e-253 879.4 624 73.1
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.2e-253 877.5 621 73.6
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.4e-252 876.3 609 74.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.5e-251 872.8 635 72.1
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.0e-251 872.5 671 69.2
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.4e-251 871.7 623 72.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 5.8e-251 870.9 624 72.3
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 2.2e-250 869.0 627 72.1
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 8.4e-250 867.1 623 72.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.4e-250 867.1 624 72.1
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 3.2e-249 865.1 650 70.3
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.2e-248 863.2 614 72.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.1e-248 862.4 642 71.7
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 6.0e-248 860.9 623 72.1
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.9e-248 860.5 627 72.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.3e-247 859.8 624 71.5
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-247 859.4 621 71.8
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.3e-247 859.0 623 70.9
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 5.1e-247 857.8 623 71.4
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 6.6e-247 857.4 616 72.2
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.6e-247 857.4 622 71.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.1e-246 856.7 627 70.0
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.5e-246 855.5 624 71.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.3e-246 855.1 624 70.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-246 854.7 621 71.7
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 5.6e-246 854.4 624 70.2
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 9.6e-246 853.6 618 70.9
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.6e-246 853.6 640 70.0
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.6e-245 852.8 616 71.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.6e-245 852.8 629 70.7
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-245 852.8 616 71.8
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.1e-244 850.1 626 70.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.8e-244 849.4 627 70.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.4e-244 849.0 616 71.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 4.0e-244 848.2 627 69.7
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 5.3e-244 847.8 623 70.3
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 5.3e-244 847.8 627 70.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 9.0e-244 847.0 616 70.3
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.2e-243 846.7 625 70.9
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.2e-243 846.7 625 70.6
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.5e-243 846.3 591 73.9
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.5e-243 846.3 627 69.1
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.4e-243 845.1 627 69.4
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 5.8e-243 844.3 704 65.5
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 7.6e-243 844.0 623 71.3
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 9.9e-243 843.6 627 68.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.2e-242 842.4 615 70.9
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.9e-242 842.0 621 70.7
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.1e-241 840.1 623 70.5
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.9e-241 839.3 623 70.3
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 7.1e-241 837.4 502 87.5
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 9.3e-241 837.0 626 70.3
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-240 836.3 618 71.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.6e-240 836.3 638 68.2
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.9e-240 833.9 617 70.2
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.1e-238 830.1 675 65.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.3e-238 828.6 625 68.6
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 9.6e-238 827.0 621 69.2
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-237 825.5 623 69.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.2e-237 824.3 620 69.0
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.5e-235 819.7 596 71.8
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 5.8e-235 817.8 594 71.9
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.2e-234 815.8 617 67.6
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.9e-234 814.7 572 73.6
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-231 805.1 586 71.2
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 6.7e-231 804.3 587 70.0
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 8.7e-231 803.9 431 96.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 3.3e-230 802.0 616 66.2
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.3e-230 801.6 622 66.1
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 9.6e-230 800.4 565 72.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.9e-228 794.3 570 71.9
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.0e-226 790.4 621 66.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.3e-226 790.0 621 65.9
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.7e-223 777.3 614 66.9
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.3e-222 775.4 614 66.4
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 6.9e-220 767.7 619 64.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 7.4e-214 747.7 660 61.8
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.5e-209 732.6 672 58.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.7e-208 728.4 502 76.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.3e-206 722.2 614 62.2
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 6.3e-205 718.0 624 60.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.0e-203 713.0 516 71.3
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.1e-201 707.2 527 69.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.1e-201 707.2 620 59.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-194 684.1 625 59.7
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.8e-191 671.0 571 62.9
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.7e-178 630.2 527 63.4
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 8.6e-178 627.9 389 85.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.6e-171 605.5 464 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.8e-166 588.6 632 51.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.9e-162 575.9 611 50.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.7e-155 553.1 596 49.0
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.6e-145 518.8 459 59.5
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.2e-141 506.9 334 76.3
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.1e-131 473.8 639 43.5
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.2e-123 448.0 440 54.1
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.6e-121 439.1 286 77.6
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-118 431.4 554 48.9
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.7e-117 427.6 597 40.5
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-114 417.2 336 65.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-108 398.3 242 79.3
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 4.5e-102 376.3 303 66.3
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.9e-90 336.7 456 44.5
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 8.8e-82 308.9 340 52.1
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.1e-79 302.0 157 98.1
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.3e-79 299.7 294 57.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.0e-74 283.9 685 31.8
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.0e-66 258.8 174 74.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 2.2e-64 251.1 553 32.7
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.7e-56 223.8 149 75.8
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.4e-55 221.1 154 74.7
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-41 174.9 98 86.7
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.6e-41 174.5 102 82.4
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.9e-40 170.2 105 78.1
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 5.4e-39 166.8 99 81.8
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.3e-32 145.6 655 25.0
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.4e-31 141.4 96 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.7e-29 135.2 120 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.8e-24 117.5 208 38.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.3e-21 108.2 66 78.8
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 6.9e-18 96.7 74 62.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.0e-17 95.1 78 56.4
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 8.4e-16 89.7 67 58.2
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 7.1e-15 86.7 215 30.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 7.9e-14 83.2 49 75.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 3.9e-13 80.9 48 75.0
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.3e-12 77.8 71 49.3
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.6e-09 68.2 82 51.2
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 4.9e-08 63.9 63 60.3
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 5.5e-07 60.5 55 61.8
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-06 58.9 52 63.5


User provided reference genes

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