Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29194 Brassica carinata HOM05D003395 ORTHO05D020046 6.7e-64 247.3 134 100.0
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 1.4e-24 116.7 96 71.9
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.4e-24 116.7 86 77.9
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 2.3e-24 115.9 86 77.9
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 3.1e-24 115.5 63 98.4
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.1e-24 115.5 86 76.7
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.1e-24 115.5 86 76.7
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 3.1e-24 115.5 96 70.8
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.0e-24 115.2 86 76.7
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 4.0e-24 115.2 86 76.7
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 5.2e-24 114.8 96 70.8
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 5.2e-24 114.8 87 74.7
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 6.8e-24 114.4 97 69.1
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 6.8e-24 114.4 86 76.7
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 6.8e-24 114.4 86 76.7
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 8.9e-24 114.0 96 70.8
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.2e-23 113.6 86 74.4
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 1.2e-23 113.6 86 75.6
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 1.2e-23 113.6 89 73.0
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 1.5e-23 113.2 87 74.7
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 1.5e-23 113.2 87 74.7
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.5e-23 113.2 86 75.6
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.5e-23 113.2 96 69.8
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.5e-23 113.2 96 69.8
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 1.5e-23 113.2 96 69.8
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.5e-23 113.2 96 68.8
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 1.5e-23 113.2 86 75.6
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 1.5e-23 113.2 86 75.6
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 74.4
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 75.6
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 2.0e-23 112.8 88 73.9
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 74.4
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 74.4
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 74.4
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 74.4
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 2.0e-23 112.8 87 73.6
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 2.0e-23 112.8 87 74.7
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 2.0e-23 112.8 96 67.7
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 75.6
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 2.0e-23 112.8 88 73.9
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 2.0e-23 112.8 86 74.4
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 2.0e-23 112.8 88 73.9
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 2.0e-23 112.8 88 73.9
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 2.6e-23 112.5 86 74.4
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 2.6e-23 112.5 65 93.8
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 2.6e-23 112.5 65 93.8
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 2.6e-23 112.5 86 75.6
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 2.6e-23 112.5 87 73.6
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 2.6e-23 112.5 86 73.3
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 2.6e-23 112.5 86 75.6
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 2.6e-23 112.5 96 68.8
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 2.6e-23 112.5 88 73.9
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 2.6e-23 112.5 86 74.4
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 2.6e-23 112.5 93 69.9
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 2.6e-23 112.5 86 74.4
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 3.4e-23 112.1 86 76.7
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 3.4e-23 112.1 96 68.8
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 3.4e-23 112.1 63 95.2
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 3.4e-23 112.1 63 95.2
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 3.4e-23 112.1 88 73.9
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 75.6
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.4e-23 111.7 61 95.1
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 4.4e-23 111.7 87 73.6
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 4.4e-23 111.7 86 74.4
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 4.4e-23 111.7 96 68.8
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 73.3
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 72.1
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 74.4
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 74.4
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 5.8e-23 111.3 87 73.6
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 5.8e-23 111.3 63 95.2
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 5.8e-23 111.3 63 95.2
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 5.8e-23 111.3 87 73.6
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 5.8e-23 111.3 87 72.4
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 5.8e-23 111.3 87 73.6
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 74.4
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 74.4
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 73.3
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 5.8e-23 111.3 87 73.6
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 5.8e-23 111.3 87 72.4
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 5.8e-23 111.3 86 73.3
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 7.5e-23 110.9 96 67.7
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 7.5e-23 110.9 86 73.3
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 9.8e-23 110.5 131 56.5
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.3e-22 110.2 63 93.7
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.7e-22 109.8 96 67.7
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 2.2e-22 109.4 86 72.1
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 2.2e-22 109.4 96 67.7
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 2.9e-22 109.0 86 72.1
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 2.9e-22 109.0 86 72.1
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 3.7e-22 108.6 63 90.5
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 8.3e-22 107.5 89 73.0
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.1e-21 107.1 87 72.4
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 1.1e-21 107.1 87 72.4
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 1.1e-21 107.1 87 72.4
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.1e-21 107.1 87 72.4
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 1.1e-21 107.1 86 70.9
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 1.4e-21 106.7 100 64.0
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 2.4e-21 105.9 88 68.2
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 5.4e-21 104.8 86 69.8
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 9.2e-21 104.0 88 68.2
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.6e-20 103.2 99 60.6
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 3.5e-20 102.1 63 85.7
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 3.5e-20 102.1 63 85.7
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.3e-19 100.1 60 90.0
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 3.0e-19 99.0 82 70.7
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 3.9e-19 98.6 116 56.9
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 8.6e-19 97.4 87 63.2
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 4.3e-18 95.1 87 60.9
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 5.6e-18 94.7 99 56.6
Oeu023124.1 Olea europaea HOM05D004521 ORTHO05D010236 2.0e-15 86.3 78 67.9
SEGI_24724 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 7.6e-15 84.3 89 58.4
SHI10457 Sapria himalayana HOM05D003395 ORTHO05D004087 1.3e-14 83.6 75 66.7
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 1.4e-13 80.1 93 47.3
FvH4_4g17140 Fragaria vesca HOM05D003395 ORTHO05D020046 4.1e-13 78.6 61 72.1
FAN12G3185 Fragaria x ananassa HOM05D003395 ORTHO05D020046 2.1e-12 76.3 61 72.1
FAN12G1311 Fragaria x ananassa HOM05D003395 ORTHO05D020046 6.0e-12 74.7 59 72.9
CSS0011071 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 6.4e-06 54.7 30 86.7


User provided reference genes

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