Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28962 Brassica carinata HOM05D002708 ORTHO05D003516 1.2e-79 299.7 139 100.0
BcaB06g28963 Brassica carinata HOM05D002708 ORTHO05D003516 4.0e-43 178.3 98 83.7
BolC4t28052H Brassica oleracea HOM05D002708 ORTHO05D003516 2.7e-39 165.6 118 65.3
A05p20460 Brassica napus HOM05D002708 ORTHO05D003516 1.6e-28 129.8 114 55.3
C07p52160 Brassica napus HOM05D002708 ORTHO05D003516 1.6e-28 129.8 114 55.3
BraA05t20959Z Brassica rapa HOM05D002708 ORTHO05D018665 1.1e-24 117.1 100 55.0
BcaC06g33705 Brassica carinata HOM05D002708 ORTHO05D003516 5.4e-24 114.8 115 51.3
A06p34900 Brassica napus HOM05D002708 ORTHO05D018665 7.1e-24 114.4 116 50.0
BraA06t26415Z Brassica rapa HOM05D002708 ORTHO05D018665 2.7e-23 112.5 116 49.1
BcaNung01821 Brassica carinata HOM05D002708 ORTHO05D018665 4.3e-21 105.1 116 46.6
BcaNung01819 Brassica carinata HOM05D002708 ORTHO05D018665 7.3e-21 104.4 116 46.6
BolC7t44890H Brassica oleracea HOM05D002708 ORTHO05D018665 1.5e-18 96.7 118 43.2
C07p43630 Brassica napus HOM05D002708 ORTHO05D018665 2.0e-18 96.3 101 46.5
Thhalv10012255m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.6e-18 95.9 125 42.4
BcaB07g32526 Brassica carinata HOM05D002708 ORTHO05D006337 2.4e-16 89.4 113 44.2
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 2.5e-13 79.3 133 34.6
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 4.3e-13 78.6 133 36.1
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 4.3e-13 78.6 133 33.8
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 5.6e-13 78.2 133 36.1
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 5.6e-13 78.2 133 34.6
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 7.3e-13 77.8 136 33.8
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 7.3e-13 77.8 137 32.8
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 9.6e-13 77.4 133 34.6
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 9.6e-13 77.4 133 34.6
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 9.6e-13 77.4 133 34.6
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 9.6e-13 77.4 137 32.8
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 1.3e-12 77.0 137 34.3
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 1.3e-12 77.0 133 35.3
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.3e-12 77.0 133 34.6
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.3e-12 77.0 133 34.6
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 34.6
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 35.3
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 34.6
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 33.8
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 33.1
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 34.6
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 34.6
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 35.3
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 1.6e-12 76.6 101 39.6
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 1.6e-12 76.6 133 33.8
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.1e-12 76.3 133 33.8
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 2.1e-12 76.3 133 33.8
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 2.1e-12 76.3 133 33.8
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 2.1e-12 76.3 133 33.8
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 2.1e-12 76.3 133 33.8
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 2.1e-12 76.3 133 33.8
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 34.6
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 33.8
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 34.6
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 34.6
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 33.1
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 34.6
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 34.6
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 2.8e-12 75.9 133 34.6
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 33.1
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 35.3
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 35.3
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 32.3
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 35.3
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 33.8
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 3.6e-12 75.5 133 33.8
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 4.8e-12 75.1 133 35.3
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 4.8e-12 75.1 133 35.3
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 4.8e-12 75.1 133 34.6
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 4.8e-12 75.1 133 34.6
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 6.2e-12 74.7 133 34.6
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 6.2e-12 74.7 133 33.1
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 6.2e-12 74.7 133 34.6
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 8.1e-12 74.3 133 32.3
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 8.1e-12 74.3 133 33.8
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 8.1e-12 74.3 133 33.1
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 8.1e-12 74.3 133 32.3
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 8.1e-12 74.3 133 32.3
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 8.1e-12 74.3 134 33.6
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 8.1e-12 74.3 133 33.1
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.1e-11 73.9 133 33.1
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 1.1e-11 73.9 133 33.1
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 1.1e-11 73.9 133 33.1
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.1e-11 73.9 133 33.1
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 1.1e-11 73.9 133 33.1
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 1.4e-11 73.6 133 33.8
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 1.4e-11 73.6 133 33.1
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 1.4e-11 73.6 133 33.8
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 1.4e-11 73.6 137 31.4
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.8e-11 73.2 133 33.1
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.8e-11 73.2 133 33.1
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.8e-11 73.2 137 32.8
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 1.8e-11 73.2 133 32.3
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 1.8e-11 73.2 133 32.3
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 1.8e-11 73.2 133 32.3
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 1.8e-11 73.2 133 32.3
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 2.4e-11 72.8 133 32.3
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 2.4e-11 72.8 133 32.3
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.4e-11 72.8 133 32.3
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 2.4e-11 72.8 133 32.3
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 2.4e-11 72.8 133 33.1
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 3.1e-11 72.4 137 32.8
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 3.1e-11 72.4 133 32.3
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 3.1e-11 72.4 133 31.6
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 4.0e-11 72.0 101 38.6
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 4.0e-11 72.0 122 36.1
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 4.0e-11 72.0 87 42.5
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 4.0e-11 72.0 133 32.3
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 4.0e-11 72.0 133 32.3
BolC7t44363H Brassica oleracea HOM05D002708 ORTHO05D018665 5.3e-11 71.6 56 60.7
Lj1g0008805 Lotus japonicus HOM05D002708 ORTHO05D003516 5.3e-11 71.6 133 30.1
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 5.3e-11 71.6 133 32.3
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.3e-11 71.6 137 32.8
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 6.9e-11 71.2 133 31.6
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 9.0e-11 70.9 133 33.1
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 9.0e-11 70.9 132 34.8
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 9.0e-11 70.9 133 31.6
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 9.0e-11 70.9 134 31.3
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 9.0e-11 70.9 137 29.9
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 9.0e-11 70.9 133 33.1
TPR.G40117 Trifolium pratense HOM05D002708 ORTHO05D003516 9.0e-11 70.9 133 35.3
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 1.2e-10 70.5 133 32.3
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 1.2e-10 70.5 133 33.1
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 1.5e-10 70.1 133 33.8
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 2.0e-10 69.7 133 30.8
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 2.0e-10 69.7 133 30.8
Thhalv10012256m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.0e-10 69.7 59 50.8
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 3.4e-10 68.9 102 38.2
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 7.6e-10 67.8 133 31.6
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 7.6e-10 67.8 83 42.2
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 9.9e-10 67.4 111 35.1
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 1.3e-09 67.0 133 30.8
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.7e-09 66.6 133 30.1
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 2.9e-09 65.9 133 31.6
FAN14G0317 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.9e-09 65.9 133 31.6
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 2.9e-09 65.9 133 31.6
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.8e-09 65.5 133 31.6
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 3.8e-09 65.5 133 32.3
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 4.9e-09 65.1 137 32.1
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 4.9e-09 65.1 137 32.1
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 4.9e-09 65.1 137 32.1
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 4.9e-09 65.1 137 32.1
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 4.9e-09 65.1 137 32.1
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 6.4e-09 64.7 133 30.8
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 6.4e-09 64.7 133 31.6
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 1.1e-08 63.9 133 31.6
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 1.1e-08 63.9 133 31.6
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 1.1e-08 63.9 133 32.3
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 1.4e-08 63.5 137 31.4
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 1.4e-08 63.5 133 32.3
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 2.4e-08 62.8 137 31.4
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 2.4e-08 62.8 101 34.7
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 2.4e-08 62.8 101 34.7
Aa31LG2G18580 Aethionema arabicum HOM05D002708 ORTHO05D003516 5.4e-08 61.6 52 50.0
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 7.1e-08 61.2 133 29.3
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 7.1e-08 61.2 87 37.9
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 9.3e-08 60.8 133 30.8
AL6G38780 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.1e-07 59.7 133 30.8
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 2.1e-07 59.7 133 29.3
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 7.9e-07 57.8 133 29.3
Nitab4.5_0015087g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.3e-06 57.0 87 33.3
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 1.7e-06 56.6 53 45.3
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 3.9e-06 55.5 133 27.1
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.9e-06 55.5 149 28.2


User provided reference genes

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