Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28672 Brassica carinata HOM05D000117 ORTHO05D000070 1.1e-84 316.6 163 100.0
AL4G28960 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 6.3e-32 141.4 96 84.4
Sp4g15620 Schrenkiella parvula HOM05D000117 ORTHO05D000070 1.1e-31 140.6 96 83.3
AT2G33310 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 1.4e-31 140.2 96 83.3
Thhalv10017143m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 1.2e-30 137.1 99 79.8
BcaC01g05848 Brassica carinata HOM05D000117 ORTHO05D000070 2.0e-30 136.3 95 80.0
C03p21820 Brassica napus HOM05D000117 ORTHO05D000070 2.0e-30 136.3 95 80.0
Carub.0004s1493 Capsella rubella HOM05D000117 ORTHO05D000070 7.7e-30 134.4 92 83.7
BolC3t14564H Brassica oleracea HOM05D000117 ORTHO05D000070 5.0e-29 131.7 96 79.2
A05p12230 Brassica napus HOM05D000117 ORTHO05D000070 3.3e-28 129.0 96 79.2
A03p18680 Brassica napus HOM05D000117 ORTHO05D000070 5.5e-28 128.3 96 77.1
BcaB02g10543 Brassica carinata HOM05D000117 ORTHO05D000070 9.5e-28 127.5 96 80.2
BcaC02g11416 Brassica carinata HOM05D000117 ORTHO05D000070 2.8e-27 125.9 96 79.2
C04p15810 Brassica napus HOM05D000117 ORTHO05D000070 2.8e-27 125.9 96 79.2
Sp1g03380 Schrenkiella parvula HOM05D000117 ORTHO05D000070 2.8e-27 125.9 91 73.6
BraA03t11128Z Brassica rapa HOM05D000117 ORTHO05D000070 1.8e-26 123.2 95 75.8
CARHR003890 Cardamine hirsuta HOM05D000117 ORTHO05D000070 2.3e-26 122.9 89 74.2
CARHR127310 Cardamine hirsuta HOM05D000117 ORTHO05D000070 8.9e-26 120.9 96 76.0
Thhalv10008626m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 3.4e-25 119.0 91 73.6
AL1G14220 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 5.7e-25 118.2 88 71.6
BcaNung06561 Brassica carinata HOM05D000117 ORTHO05D000070 1.1e-23 114.0 92 69.6
AT1G04550 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 1.8e-23 113.2 88 69.3
Carub.0001s0376 Capsella rubella HOM05D000117 ORTHO05D000070 1.8e-23 113.2 79 77.2
THA.LOC104826098 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 2.7e-22 109.4 113 56.6
BcaNung05971 Brassica carinata HOM05D000117 ORTHO05D000070 7.8e-22 107.8 89 67.4
Aa31LG5G4000 Aethionema arabicum HOM05D000117 ORTHO05D000070 6.6e-21 104.8 64 85.9
THA.LOC104816008 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 8.6e-21 104.4 90 68.9
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 7.3e-20 101.3 83 66.3
BraA10t42566Z Brassica rapa HOM05D000117 ORTHO05D000070 7.3e-20 101.3 87 65.5
BolC5t29053H Brassica oleracea HOM05D000117 ORTHO05D000070 2.8e-19 99.4 72 75.0
C05p02720 Brassica napus HOM05D000117 ORTHO05D000070 1.0e-18 97.4 72 73.6
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 4.0e-18 95.5 83 63.9
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 4.4e-17 92.0 93 60.2
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 5.8e-17 91.7 87 60.9
THA.LOC104808743 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 4.6e-14 82.0 68 66.2
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.0e-13 80.9 88 55.7
CiPaw.02G106500 Carya illinoinensis HOM05D000117 ORTHO05D000070 2.5e-12 76.3 92 52.2
Cpa.g.sc59.6 Carica papaya HOM05D000117 ORTHO05D000070 4.3e-12 75.5 91 49.5
QL06p021209 Quercus lobata HOM05D000117 ORTHO05D000070 5.6e-12 75.1 117 46.2
TWI53G0914 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 1.2e-11 73.9 97 49.5
Prupe.1G049200 Prunus persica HOM05D000117 ORTHO05D000070 2.1e-11 73.2 103 44.7
Potri.008G172400 Populus trichocarpa HOM05D000117 ORTHO05D000070 2.8e-11 72.8 106 48.1
TWI09G0263 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 1.1e-10 70.9 98 46.9
Haze_11465 Corylus avellana HOM05D000117 ORTHO05D000070 1.4e-10 70.5 96 46.9
Cfa014788 Carpinus fangiana HOM05D000117 ORTHO05D000070 4.0e-10 68.9 105 45.7
Ciclev10005544m.g Citrus clementina HOM05D000117 ORTHO05D000070 4.0e-10 68.9 98 46.9
MD13G1222200 Malus domestica HOM05D000117 ORTHO05D000070 4.0e-10 68.9 121 39.7
TWI73G0908 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 4.0e-10 68.9 98 48.0
CiPaw.01G177300 Carya illinoinensis HOM05D000117 ORTHO05D000070 6.8e-10 68.2 109 43.1
Gorai.011G180100 Gossypium raimondii HOM05D000117 ORTHO05D000070 8.9e-10 67.8 87 49.4
MD16G1227100 Malus domestica HOM05D000117 ORTHO05D000070 8.9e-10 67.8 106 42.5
Duzib212G0168 Durio zibethinus HOM05D000117 ORTHO05D000070 2.0e-09 66.6 152 37.5
Sabra08G0131700 Salix brachista HOM05D000117 ORTHO05D000070 2.0e-09 66.6 109 44.0
Thecc.04G265600 Theobroma cacao HOM05D000117 ORTHO05D000070 2.6e-09 66.2 107 44.9
CsaV3_2G012400 Cucumis sativus L. HOM05D000117 ORTHO05D000070 3.4e-09 65.9 108 43.5
Duzib151G0596 Durio zibethinus HOM05D000117 ORTHO05D000070 3.4e-09 65.9 152 39.5
Potri.010G065200 Populus trichocarpa HOM05D000117 ORTHO05D000070 4.4e-09 65.5 101 46.5
Gohir.D09G228200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 5.8e-09 65.1 118 42.4
Gorai.006G250900 Gossypium raimondii HOM05D000117 ORTHO05D000070 5.8e-09 65.1 118 42.4
Gohir.A10G107200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 7.5e-09 64.7 90 48.9
Gohir.D10G160400 Gossypium hirsutum HOM05D000117 ORTHO05D000070 7.5e-09 64.7 90 48.9
Sabra10G0041900 Salix brachista HOM05D000117 ORTHO05D000070 1.7e-08 63.5 104 43.3
Duzib052G1060 Durio zibethinus HOM05D000117 ORTHO05D000070 2.2e-08 63.2 94 45.7
FvH4_4g04700 Fragaria vesca HOM05D000117 ORTHO05D000070 2.2e-08 63.2 97 44.3
FAN12G1248 Fragaria x ananassa HOM05D000117 ORTHO05D000070 2.2e-08 63.2 97 44.3
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 2.2e-08 63.2 97 43.3
Atru.chr4.1908 Acer truncatum HOM05D000117 ORTHO05D000070 2.9e-08 62.8 104 44.2
MELO3C023046.2 Cucumis melo HOM05D000117 ORTHO05D000070 2.9e-08 62.8 117 41.9
Nitab4.5_0000355g0060 Nicotiana tabacum HOM05D000117 ORTHO05D000070 2.9e-08 62.8 109 41.3
RcHm_v2.0_Chr4g0395511 Rosa chinensis HOM05D000117 ORTHO05D000070 2.9e-08 62.8 110 41.8
ClCG06G007280 Citrullus lanatus HOM05D000117 ORTHO05D000070 3.7e-08 62.4 106 42.5
Eucgr.H02914 Eucalyptus grandis HOM05D000117 ORTHO05D000070 4.9e-08 62.0 83 48.2
FAN17G2165 Fragaria x ananassa HOM05D000117 ORTHO05D000070 4.9e-08 62.0 95 44.2
Gohir.A09G227200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 4.9e-08 62.0 106 43.4
ClCG05G003950 Citrullus lanatus HOM05D000117 ORTHO05D000070 6.4e-08 61.6 93 44.1
Oeu061872.1 Olea europaea HOM05D000117 ORTHO05D000070 6.4e-08 61.6 97 49.5
Oeu061873.1 Olea europaea HOM05D000117 ORTHO05D000070 6.4e-08 61.6 97 49.5
Oeu061874.1 Olea europaea HOM05D000117 ORTHO05D000070 6.4e-08 61.6 97 49.5
Solyc09g090910.3 Solanum lycopersicum HOM05D000117 ORTHO05D000070 8.3e-08 61.2 91 42.9
COL.COLO4_15973 Corchorus olitorius HOM05D000161 ORTHO05D000070 1.1e-07 60.8 98 45.9
MELO3C006371.2 Cucumis melo HOM05D000117 ORTHO05D000070 1.1e-07 60.8 92 43.5
CsaV3_3G011620 Cucumis sativus L. HOM05D000117 ORTHO05D000070 1.1e-07 60.8 91 42.9
Manes.03G158300 Manihot esculenta HOM05D000117 ORTHO05D000070 1.1e-07 60.8 97 41.2
Sed0007125 Sechium edule HOM05D000117 ORTHO05D000070 1.9e-07 60.1 83 43.4
Sopen09g033890 Solanum pennellii HOM05D000117 ORTHO05D000070 1.9e-07 60.1 91 41.8
PGSC0003DMG400001498 Solanum tuberosum HOM05D000117 ORTHO05D000070 1.9e-07 60.1 91 41.8
FAN22G1514 Fragaria x ananassa HOM05D000117 ORTHO05D000070 3.2e-07 59.3 97 43.3
SalBow2G0935 Salvia bowleyana HOM05D000117 ORTHO05D000070 3.2e-07 59.3 87 42.5
Hma1.2p1_0112F.1_g054800 Hydrangea macrophylla HOM05D000117 ORTHO05D000070 4.1e-07 58.9 108 38.0
Sed0015332 Sechium edule HOM05D000117 ORTHO05D000070 4.1e-07 58.9 78 50.0
PGR031G0139 Punica granatum HOM05D000117 ORTHO05D000070 5.4e-07 58.5 98 42.9
PGR031G2925 Punica granatum HOM05D000117 ORTHO05D000070 5.4e-07 58.5 98 42.9
TAR636G2695 Trochodendron aralioides HOM05D000117 ORTHO05D000070 5.4e-07 58.5 104 42.3
Peaxi162Scf01044g00226 Petunia axillaris HOM05D000117 ORTHO05D000070 9.2e-07 57.8 94 41.5
GSVIVG01027921001 Vitis vinifera HOM05D000117 ORTHO05D000070 1.6e-06 57.0 105 39.0
MSTRG.9852 Avicennia marina HOM05D000117 ORTHO05D000070 2.1e-06 56.6 104 36.5
Dinv29799 Davidia involucrata HOM05D001109 ORTHO05D001051 2.7e-06 56.2 97 39.2
CSS0037149 Camellia sinensis var. sinensis HOM05D000117 ORTHO05D000070 7.8e-06 54.7 103 41.7
Manes.15G046200 Manihot esculenta HOM05D000117 ORTHO05D000070 7.8e-06 54.7 112 40.2


User provided reference genes

Program Settings