Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28666 Brassica carinata HOM05D000725 ORTHO05D003141 5.1e-105 384.4 192 100.0
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 1.2e-29 134.0 126 58.7
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 1.3e-28 130.6 109 66.1
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 1.2e-24 117.5 122 55.7
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 2.6e-24 116.3 100 63.0
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 4.4e-24 115.5 152 46.1
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 7.5e-24 114.8 160 45.0
A02p25850 Brassica napus HOM05D000725 ORTHO05D003141 1.4e-22 110.5 115 57.4
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 5.9e-21 105.1 103 58.3
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 1.3e-20 104.0 111 57.7
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 2.9e-20 102.8 125 49.6
Thhalv10000722m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 3.8e-20 102.4 109 57.8
CARHR112360 Cardamine hirsuta HOM05D000725 ORTHO05D003141 8.9e-17 91.3 86 59.3
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 7.5e-16 88.2 113 48.7
A04p17710 Brassica napus HOM05D000725 ORTHO05D003141 2.4e-14 83.2 59 74.6
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 1.6e-10 70.5 84 41.7
BraA03t12293Z Brassica rapa HOM05D000725 ORTHO05D003141 4.7e-10 68.9 72 51.4
Aa31LG7G15070 Aethionema arabicum HOM05D000725 ORTHO05D003141 1.8e-09 67.0 76 51.3
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 2.3e-09 66.6 78 42.3
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 3.1e-09 66.2 76 43.4
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 4.0e-09 65.9 83 42.2
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 4.0e-09 65.9 67 49.3
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 4.0e-09 65.9 92 38.0
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 4.0e-09 65.9 89 37.1
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 5.2e-09 65.5 67 44.8
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 5.2e-09 65.5 67 43.3
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 5.2e-09 65.5 98 39.8
THA.LOC104807870 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 5.2e-09 65.5 66 47.0
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 6.8e-09 65.1 73 42.5
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 6.8e-09 65.1 73 42.5
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 8.9e-09 64.7 94 38.3
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 8.9e-09 64.7 104 35.6
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 8.9e-09 64.7 72 44.4
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 1.2e-08 64.3 108 36.1
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 1.2e-08 64.3 72 44.4
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 1.2e-08 64.3 72 44.4
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 1.2e-08 64.3 76 40.8
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.5e-08 63.9 67 44.8
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 2.0e-08 63.5 67 38.8
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 2.6e-08 63.2 118 31.4
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 2.6e-08 63.2 104 32.7
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 2.6e-08 63.2 92 37.0
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 3.4e-08 62.8 68 42.6
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 3.4e-08 62.8 104 37.5
GSVIVG01024512001 Vitis vinifera HOM05D000725 ORTHO05D003141 3.4e-08 62.8 72 40.3
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 4.4e-08 62.4 67 46.3
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 4.4e-08 62.4 106 33.0
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 4.4e-08 62.4 71 42.3
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 4.4e-08 62.4 83 41.0
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 4.4e-08 62.4 67 37.3
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 4.4e-08 62.4 86 39.5
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 4.4e-08 62.4 101 32.7
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 5.8e-08 62.0 81 35.8
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 5.8e-08 62.0 105 31.4
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 5.8e-08 62.0 72 41.7
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 5.8e-08 62.0 70 41.4
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 7.5e-08 61.6 114 34.2
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 7.5e-08 61.6 106 33.0
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 7.5e-08 61.6 94 37.2
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 7.5e-08 61.6 91 44.0
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 9.8e-08 61.2 94 40.4
Cpa.g.sc1026.2 Carica papaya HOM05D000725 ORTHO05D003141 9.8e-08 61.2 82 36.6
AUR62011280 Chenopodium quinoa HOM05D000725 ORTHO05D003141 9.8e-08 61.2 72 40.3
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 9.8e-08 61.2 67 41.8
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 9.8e-08 61.2 74 39.2
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 1.3e-07 60.8 67 43.3
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 1.3e-07 60.8 104 30.8
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 1.3e-07 60.8 104 34.6
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.3e-07 60.8 80 33.8
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.3e-07 60.8 80 33.8
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.3e-07 60.8 67 44.8
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 1.3e-07 60.8 113 31.9
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 1.3e-07 60.8 113 31.9
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 1.3e-07 60.8 74 39.2
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 1.3e-07 60.8 74 44.6
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 1.3e-07 60.8 67 38.8
unitig_21.g20795 Utricularia gibba HOM05D000725 ORTHO05D003141 1.3e-07 60.8 68 45.6
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 1.7e-07 60.5 109 31.2
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 1.7e-07 60.5 113 32.7
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 2.2e-07 60.1 67 41.8
AL3G52550 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 2.2e-07 60.1 72 40.3
ECA234G2709 Erigeron canadensis HOM05D000725 ORTHO05D003141 2.2e-07 60.1 79 41.8
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 2.2e-07 60.1 104 31.7
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 2.2e-07 60.1 113 31.9
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 2.9e-07 59.7 93 37.6
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 2.9e-07 59.7 97 39.2
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 3.7e-07 59.3 91 36.3
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 3.7e-07 59.3 93 32.3
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 3.7e-07 59.3 104 30.8
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 4.9e-07 58.9 67 43.3
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 4.9e-07 58.9 104 30.8
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 6.4e-07 58.5 84 38.1
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 6.4e-07 58.5 89 37.1
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 6.4e-07 58.5 67 43.3
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 6.4e-07 58.5 85 38.8
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 6.4e-07 58.5 67 43.3
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 6.4e-07 58.5 97 33.0
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 6.4e-07 58.5 100 36.0
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 6.4e-07 58.5 74 40.5
Actinidia27877 Actinidia chinensis HOM05D000725 ORTHO05D003141 8.3e-07 58.2 70 41.4
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 8.3e-07 58.2 119 30.3
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 8.3e-07 58.2 76 34.2
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 8.3e-07 58.2 104 30.8
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 8.3e-07 58.2 75 41.3
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 8.3e-07 58.2 67 41.8
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 8.3e-07 58.2 86 34.9
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 8.3e-07 58.2 100 29.0
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 1.1e-06 57.8 66 42.4
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 1.1e-06 57.8 74 40.5
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 1.1e-06 57.8 90 33.3
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 1.4e-06 57.4 84 36.9
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.4e-06 57.4 76 38.2
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 1.4e-06 57.4 99 34.3
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 1.4e-06 57.4 93 35.5
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.4e-06 57.4 105 29.5
Lj7A123T30 Lonicera japonica HOM05D000725 ORTHO05D003141 1.4e-06 57.4 88 34.1
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 1.4e-06 57.4 67 40.3
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 1.4e-06 57.4 93 34.4
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 1.4e-06 57.4 71 45.1
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 1.9e-06 57.0 89 37.1
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 1.9e-06 57.0 88 37.5
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.9e-06 57.0 85 36.5
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 2.4e-06 56.6 126 28.6
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 2.4e-06 56.6 106 32.1
RcHm_v2.0_Chr1g0330471 Rosa chinensis HOM05D000725 ORTHO05D003141 2.4e-06 56.6 102 33.3
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 2.4e-06 56.6 117 30.8
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 4.1e-06 55.8 72 38.9
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 5.4e-06 55.5 67 35.8
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 5.4e-06 55.5 67 35.8
CDE06G1623 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 5.4e-06 55.5 80 37.5
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 5.4e-06 55.5 68 41.2
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 5.4e-06 55.5 100 32.0
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 7.0e-06 55.1 85 37.6
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 7.0e-06 55.1 67 37.3
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 9.2e-06 54.7 121 32.2
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 9.2e-06 54.7 65 44.6


User provided reference genes

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