Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 4.1e-162 574.7 301 100.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.5e-107 391.3 445 54.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 6.1e-105 384.8 445 53.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-102 376.7 248 81.0
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.3e-102 374.8 445 52.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.0e-100 369.8 445 51.2
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.0e-99 367.5 248 79.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.8e-99 365.5 248 78.6
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.8e-99 365.5 248 78.6
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.8e-99 365.5 248 78.6
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 8.5e-99 364.4 248 78.6
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-98 363.6 248 78.2
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.0e-91 340.9 248 73.4
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.1e-90 337.4 243 73.3
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.5e-90 337.0 248 72.2
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.7e-89 332.0 248 71.4
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.4e-88 330.5 249 70.3
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.3e-88 329.7 248 71.0
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.3e-88 329.7 248 71.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.6e-87 326.2 248 70.2
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.6e-87 326.2 243 70.0
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 7.5e-87 324.7 247 69.6
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 7.5e-87 324.7 247 69.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 7.5e-87 324.7 243 71.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 4.8e-86 322.0 243 70.4
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 4.8e-86 322.0 243 68.3
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-85 320.9 243 70.0
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-85 320.9 243 70.0
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.1e-85 320.9 243 70.0
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 3.1e-85 319.3 243 69.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 7.0e-85 318.2 248 69.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 9.1e-85 317.8 243 67.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 9.1e-85 317.8 243 69.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.2e-84 317.4 434 47.0
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.0e-84 316.6 243 69.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.0e-84 316.6 236 72.0
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.5e-84 315.8 243 68.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.5e-84 315.8 243 67.9
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 4.5e-84 315.5 248 67.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 4.5e-84 315.5 248 67.7
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.5e-84 315.5 243 70.0
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 5.9e-84 315.1 248 67.3
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.7e-84 314.7 243 67.5
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.3e-83 313.9 243 67.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.7e-83 313.5 243 69.5
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.2e-83 313.2 243 68.3
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.2e-83 313.2 243 69.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.9e-83 312.8 243 67.9
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 3.8e-83 312.4 243 67.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 5.0e-83 312.0 248 66.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.0e-83 312.0 248 66.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.5e-83 311.6 243 67.9
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 6.5e-83 311.6 243 67.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 6.5e-83 311.6 243 67.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 6.5e-83 311.6 243 68.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.1e-82 310.8 243 67.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.5e-82 310.5 242 66.9
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.5e-82 310.5 243 67.5
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.9e-82 310.1 247 67.2
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.9e-82 310.1 243 66.7
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 2.5e-82 309.7 248 66.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.2e-82 308.9 269 63.6
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.2e-81 307.4 243 66.7
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.2e-81 307.4 243 67.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.2e-81 307.4 243 65.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.7e-81 306.2 247 66.0
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.6e-81 305.8 243 68.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.0e-81 304.7 247 66.8
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.0e-81 304.7 247 66.8
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.0e-80 304.3 243 67.1
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-80 303.1 248 66.5
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.3e-80 303.1 248 64.9
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.3e-80 303.1 243 65.4
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.3e-80 303.1 248 65.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.0e-80 302.8 243 68.3
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.0e-80 302.8 229 68.6
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.0e-80 302.4 243 65.8
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 5.2e-80 302.0 243 67.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.2e-80 302.0 243 65.4
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 5.2e-80 302.0 243 65.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.2e-80 302.0 248 64.9
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 8.8e-80 301.2 243 65.0
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 8.8e-80 301.2 243 65.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 8.8e-80 301.2 243 65.4
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.2e-79 300.8 243 67.9
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.5e-79 300.4 243 66.7
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.5e-79 300.4 243 64.2
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 5.7e-79 298.5 243 65.4
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.3e-78 297.4 247 64.0
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.8e-78 296.2 243 63.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.8e-78 296.2 243 64.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.8e-78 296.2 248 63.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.8e-78 295.4 243 65.4
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 6.3e-78 295.0 243 63.8
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.1e-77 294.3 248 62.5
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.4e-77 293.9 243 63.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.2e-76 290.8 248 62.5
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.2e-76 290.8 248 61.7
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.7e-76 289.7 238 64.7
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 3.5e-76 289.3 243 63.4
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 8.6e-75 284.6 243 61.3
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.5e-74 283.1 243 62.6
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 7.2e-74 281.6 243 63.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.0e-72 275.8 255 58.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.6e-71 273.1 236 60.6
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 4.4e-71 272.3 204 70.1
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.2e-70 270.0 214 68.2
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-68 263.5 248 56.9
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.8e-68 261.5 237 59.9
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.3e-67 260.8 224 62.5
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-67 260.4 296 57.1
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 2.8e-65 253.1 195 66.2
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 8.9e-64 248.1 313 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.2e-60 237.7 274 51.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 6.6e-59 231.9 255 53.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 9.5e-58 228.0 257 54.1
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.8e-57 226.5 250 54.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 3.1e-56 223.0 283 46.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.0e-56 222.6 203 65.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.9e-54 216.5 287 44.6
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.2e-52 211.1 226 52.7
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.7e-51 207.2 250 50.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 4.1e-45 186.0 251 45.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.3e-42 176.0 248 45.6
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 9.5e-42 174.9 262 43.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.8e-41 173.3 217 49.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.6e-39 166.8 254 45.3
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 5.8e-39 165.6 256 43.0
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.6e-36 157.5 147 58.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 7.8e-36 155.2 282 38.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.6e-31 138.7 164 47.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.7e-20 103.6 72 73.6
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 7.6e-15 85.5 99 49.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.5e-13 79.3 87 57.5
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 3.8e-06 56.6 63 46.0


User provided reference genes

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