Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 1.4e-167 592.8 295 100.0
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 4.8e-163 577.8 295 96.9
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 4.8e-163 577.8 295 96.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.4e-162 576.2 295 96.6
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.4e-162 576.2 295 96.6
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.4e-162 576.2 295 96.6
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 4.3e-156 554.7 292 95.2
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 7.9e-150 533.9 292 90.1
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.0e-149 533.5 292 90.1
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 5.1e-149 531.2 292 89.7
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.9e-144 515.4 296 85.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 1.1e-143 513.5 292 87.7
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 6.1e-142 507.7 295 86.8
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.4e-132 474.9 291 78.4
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 9.7e-132 473.8 291 78.7
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.3e-131 473.4 293 77.8
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 2.2e-131 472.6 291 79.0
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 3.7e-131 471.9 292 77.1
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.4e-130 469.2 291 78.4
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.1e-130 468.8 291 78.4
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 9.1e-130 467.2 294 76.9
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 7.7e-129 464.2 291 77.0
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.0e-128 463.8 291 76.3
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.2e-128 462.6 291 76.6
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.9e-128 462.2 291 77.3
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 3.8e-128 461.8 291 77.7
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 8.5e-128 460.7 291 76.6
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 2.5e-127 459.1 291 76.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 4.2e-127 458.4 294 75.2
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 5.5e-127 458.0 291 74.9
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 7.2e-127 457.6 291 74.9
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 7.2e-127 457.6 291 75.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 9.4e-127 457.2 291 75.3
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.2e-126 456.8 291 77.0
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.6e-126 456.4 291 75.6
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.1e-126 456.1 294 74.8
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 3.6e-126 455.3 286 75.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 3.6e-126 455.3 291 74.6
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 3.6e-126 455.3 291 73.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 4.7e-126 454.9 291 77.0
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 6.1e-126 454.5 291 75.3
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.0e-125 453.8 292 76.7
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 1.0e-125 453.8 291 73.5
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.8e-125 453.0 290 74.8
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.8e-125 453.0 292 76.7
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 1.8e-125 453.0 294 75.2
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.3e-125 452.6 292 76.0
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 3.0e-125 452.2 291 75.3
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 3.0e-125 452.2 291 75.6
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 5.2e-125 451.4 292 75.3
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 5.2e-125 451.4 294 76.2
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 5.2e-125 451.4 292 75.0
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 5.2e-125 451.4 291 73.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 6.8e-125 451.1 302 73.8
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 6.8e-125 451.1 291 73.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 1.5e-124 449.9 291 73.5
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 74.6
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 74.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 74.6
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 2.2e-123 446.0 291 74.6
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.2e-123 446.0 291 73.5
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 2.2e-123 446.0 291 73.9
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 3.7e-123 445.3 291 73.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.8e-123 444.9 292 74.3
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 4.8e-123 444.9 294 73.8
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 8.3e-123 444.1 291 73.5
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.1e-122 443.7 290 72.4
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.4e-122 443.4 293 72.4
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 2.4e-122 442.6 293 73.7
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 9.1e-122 440.7 291 72.2
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 5.9e-121 438.0 322 68.0
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.3e-120 436.8 291 73.2
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 3.8e-120 435.3 292 71.6
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.1e-119 433.7 291 72.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.1e-119 433.7 324 66.0
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 4.2e-119 431.8 291 71.1
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 7.2e-119 431.0 291 72.5
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.0e-117 427.2 293 70.6
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.8e-117 426.4 291 71.5
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.3e-117 426.0 326 65.3
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 6.8e-117 424.5 272 75.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.5e-116 423.3 275 76.4
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.2e-115 419.5 291 72.2
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.6e-113 413.3 271 74.9
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.7e-113 412.5 304 67.4
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 8.0e-110 401.0 232 81.0
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 8.0e-110 401.0 268 74.3
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 8.0e-110 401.0 288 67.0
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.0e-109 400.6 292 68.2
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 6.8e-109 397.9 240 78.3
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.6e-108 396.0 270 73.7
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 6.4e-107 391.3 231 78.8
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.3e-104 383.6 231 77.9
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.7e-104 383.3 267 68.5
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 5.2e-101 371.7 221 81.9
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 8.9e-101 370.9 208 88.9
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.9e-98 363.2 247 72.5
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 6.8e-93 344.7 230 72.6
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.1e-90 337.4 290 57.6
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 3.5e-89 332.4 293 56.3
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 2.3e-88 329.7 291 57.0
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 7.3e-79 298.1 282 58.9
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.8e-78 296.2 402 45.0
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 1.9e-66 256.9 272 52.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 9.6e-55 218.0 153 73.9
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 4.8e-54 215.7 291 39.9
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.1e-53 214.5 243 46.5
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 9.0e-53 211.5 258 51.9
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 9.3e-50 201.4 120 80.0
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 5.1e-48 195.7 117 73.5
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 9.7e-47 191.4 193 53.4
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.4e-40 171.0 146 63.7
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 3.1e-37 159.8 234 41.0
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 2.0e-36 157.1 175 51.4
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 4.4e-31 139.4 111 62.2
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.5e-28 131.0 83 77.1
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 5.5e-26 122.5 63 87.3
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-19 101.3 52 88.5
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 4.2e-18 96.3 60 76.7
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.0e-15 87.4 47 78.7
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 9.7e-15 85.1 45 82.2
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.7e-14 83.2 46 82.6
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 9.1e-13 78.6 190 31.6
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.2e-12 78.2 110 40.9
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 4.5e-12 76.3 59 59.3
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.5e-10 70.5 45 73.3
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 3.6e-09 66.6 117 42.7
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 4.7e-09 66.2 77 45.5
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 8.0e-09 65.5 42 81.0
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 8.0e-09 65.5 181 29.8
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 5.2e-08 62.8 181 30.4
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 1.2e-07 61.6 79 44.3
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.4e-07 59.7 174 29.9
C08p38870 Brassica napus HOM05D005598 ORTHO05D041141 9.8e-07 58.5 31 90.3
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.3e-06 58.2 25 96.0
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 2.8e-06 57.0 166 30.7
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 2.8e-06 57.0 83 45.8


User provided reference genes

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