Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27632 Brassica carinata HOM05D000003 ORTHO05D009772 1.5e-62 242.7 121 100.0
C02p54310 Brassica napus HOM05D000003 ORTHO05D009772 9.5e-25 117.1 92 60.9
BolC9t57066H Brassica oleracea HOM05D000003 ORTHO05D009772 3.4e-22 108.6 92 55.4
C02p14790 Brassica napus HOM05D000003 ORTHO05D009772 1.9e-20 102.8 91 47.3
BolC2t07608H Brassica oleracea HOM05D000003 ORTHO05D009772 1.9e-20 102.8 91 47.3
AL2G19440 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 2.4e-20 102.4 76 52.6
AT5G33330 Arabidopsis thaliana HOM05D000003 ORTHO05D009772 2.0e-19 99.4 86 47.7
AL3G45380 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 7.8e-19 97.4 86 54.7
C09p19850 Brassica napus HOM05D000003 ORTHO05D009772 7.8e-19 97.4 79 59.5
BolC9t54890H Brassica oleracea HOM05D000003 ORTHO05D009772 3.9e-18 95.1 77 59.7
C09p41800 Brassica napus HOM05D000003 ORTHO05D009772 4.3e-17 91.7 77 55.8
AL6G40320 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 9.5e-17 90.5 78 51.3
C05p36970 Brassica napus HOM05D001224 ORTHO05D024276 1.2e-16 90.1 69 63.8
AL8G21850 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 8.1e-16 87.4 87 44.8
Thhalv10012119m.g Eutrema salsugineum HOM05D000003 ORTHO05D009772 1.8e-15 86.3 96 42.7
AL8G19200 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 3.1e-15 85.5 75 50.7
AL3G45450 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 5.2e-15 84.7 74 52.7
BolC7t41023H Brassica oleracea HOM05D000003 ORTHO05D000004 1.2e-14 83.6 76 46.1
C07p06100 Brassica napus HOM05D000003 ORTHO05D000004 2.0e-14 82.8 76 46.1
A01p14050 Brassica napus HOM05D000485 ORTHO05D000341 2.6e-14 82.4 75 52.0
C05p29390 Brassica napus HOM05D000003 ORTHO05D009772 3.4e-14 82.0 84 42.9
BolC5t31671H Brassica oleracea HOM05D000003 ORTHO05D009772 3.4e-14 82.0 84 42.9
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.5e-14 80.9 79 48.1
AL2G12670 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 1.7e-13 79.7 94 43.6
Aa31LG8G16480 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-13 79.3 87 37.9
Aa31LG7G1610 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.7e-13 78.6 84 42.9
Aa31LG1G1440 Aethionema arabicum HOM05D000003 ORTHO05D009772 6.4e-13 77.8 84 47.6
Aa31sc466G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.3e-13 77.4 84 41.7
AL2G10570 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 1.1e-12 77.0 84 41.7
Aa31csc275G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-12 75.9 85 41.2
Aa31sc314G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-12 75.9 80 47.5
AT3G60040 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.1e-12 75.1 63 49.2
Aa31LG1G2610 Aethionema arabicum HOM05D000003 ORTHO05D009772 5.4e-12 74.7 94 37.2
Aa31sc200G60 Aethionema arabicum HOM05D000003 ORTHO05D009772 7.1e-12 74.3 99 35.4
Aa31LG1G5430 Aethionema arabicum HOM05D000003 ORTHO05D009772 9.2e-12 73.9 88 40.9
Aa31LG7G12380 Aethionema arabicum HOM05D000003 ORTHO05D009772 9.2e-12 73.9 105 34.3
Aa31sc256G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-11 73.6 77 45.5
Aa31LG5G23430 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-11 73.2 89 41.6
Aa31LG5G23610 Aethionema arabicum HOM05D000003 ORTHO05D000411 1.6e-11 73.2 91 37.4
Aa31LG2G16390 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-11 72.8 91 40.7
Sp7g08400 Schrenkiella parvula HOM05D000003 ORTHO05D009772 2.1e-11 72.8 81 39.5
Aa31LG11G6710 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.5e-11 72.0 85 42.4
Aa31LG2G6440 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.5e-11 72.0 89 36.0
Aa31LG9G4050 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.5e-11 72.0 89 36.0
Aa31sc77G40 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.5e-11 72.0 89 42.7
BcaB02g10745 Brassica carinata HOM05D000003 ORTHO05D009772 3.5e-11 72.0 109 33.0
Sp2g02790 Schrenkiella parvula HOM05D000003 ORTHO05D009772 4.6e-11 71.6 87 35.6
Aa31LG11G5950 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.0e-11 71.2 77 45.5
Sp7g09380 Schrenkiella parvula HOM05D000003 ORTHO05D009772 6.0e-11 71.2 81 43.2
Aa31sc118G40 Aethionema arabicum HOM05D000003 ORTHO05D009772 7.8e-11 70.9 97 33.0
Aa31LG11G7720 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-10 70.1 77 41.6
Aa31LG10G7630 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.7e-10 69.7 110 32.7
Sp6g38460 Schrenkiella parvula HOM05D000003 ORTHO05D009772 1.7e-10 69.7 100 41.0
Aa31LG2G15460 Aethionema arabicum HOM05D000003 ORTHO05D000411 2.3e-10 69.3 73 45.2
Aa31LG6G11540 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-10 69.3 77 42.9
BcaB08g35992 Brassica carinata HOM05D000003 ORTHO05D009772 2.3e-10 69.3 101 33.7
BcaC04g20002 Brassica carinata HOM05D000003 ORTHO05D009772 2.3e-10 69.3 101 33.7
Sp6g06150 Schrenkiella parvula HOM05D000003 ORTHO05D009772 2.3e-10 69.3 81 46.9
Aa31LG2G17780 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.0e-10 68.9 77 42.9
Aa31LG4G19050 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.0e-10 68.9 86 40.7
Aa31sc17G250 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.0e-10 68.9 77 42.9
Aa31sc360G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.0e-10 68.9 77 44.2
BolC7t43567H Brassica oleracea HOM05D000003 ORTHO05D009772 3.0e-10 68.9 77 44.2
Aa31LG1G13000 Aethionema arabicum HOM05D000003 ORTHO05D009772 5.1e-10 68.2 86 40.7
Aa31LG1G2520 Aethionema arabicum HOM05D000003 ORTHO05D009772 1.1e-09 67.0 78 35.9
Aa31sc210G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-09 67.0 77 42.9
Aa31LG4G11770 Aethionema arabicum HOM05D000003 ORTHO05D009772 1.5e-09 66.6 77 39.0
BcaC01g02466 Brassica carinata HOM05D000003 ORTHO05D009772 1.5e-09 66.6 95 33.7
C08p15950 Brassica napus HOM05D000003 ORTHO05D009772 1.9e-09 66.2 96 36.5
Aa31LG7G9420 Aethionema arabicum HOM05D000003 ORTHO05D009772 2.5e-09 65.9 77 40.3
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-09 65.9 77 40.3
BcaC06g34333 Brassica carinata HOM05D000003 ORTHO05D009772 3.3e-09 65.5 77 42.9
Aa31sc25G150 Aethionema arabicum HOM05D000003 ORTHO05D009772 4.3e-09 65.1 75 38.7
Aa31LG11G11010 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.6e-09 64.7 76 40.8
Aa31LG7G12700 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.6e-09 64.7 77 37.7
BcaB07g33905 Brassica carinata HOM05D014135 ORTHO05D016458 5.6e-09 64.7 83 36.1
BcaC03g15462 Brassica carinata HOM05D000003 ORTHO05D009772 5.6e-09 64.7 77 39.0
BolC6t38377H Brassica oleracea HOM05D000003 ORTHO05D009772 5.6e-09 64.7 77 42.9
Sp1g33730 Schrenkiella parvula HOM05D000003 ORTHO05D009772 5.6e-09 64.7 79 36.7
Aa31sc369G20 Aethionema arabicum HOM05D000003 ORTHO05D009772 9.5e-09 63.9 100 33.0
BraA01t01353Z Brassica rapa HOM05D000485 ORTHO05D000341 9.5e-09 63.9 54 55.6
Thhalv10001198m.g Eutrema salsugineum HOM05D000003 ORTHO05D009772 9.5e-09 63.9 80 47.5
Aa31LG11G4790 Aethionema arabicum HOM05D000003 ORTHO05D009772 1.2e-08 63.5 77 37.7
Aa31LG3G5620 Aethionema arabicum HOM05D000003 ORTHO05D009772 1.2e-08 63.5 78 38.5
Aa31LG8G11280 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.2e-08 63.5 101 34.7
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.2e-08 63.5 78 38.5
Aa31LG7G12310 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-08 63.2 75 42.7
BolC7t44732H Brassica oleracea HOM05D000003 ORTHO05D009772 1.6e-08 63.2 79 38.0
C02p17900 Brassica napus HOM05D000003 ORTHO05D009772 2.1e-08 62.8 91 34.1
BolC2t07921H Brassica oleracea HOM05D000003 ORTHO05D009772 2.1e-08 62.8 91 34.1
BolC3t16094H Brassica oleracea HOM05D000003 ORTHO05D016458 2.1e-08 62.8 68 45.6
Aa31LG10G9400 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 89 34.8
BcaC07g42246 Brassica carinata HOM05D014135 ORTHO05D016458 2.8e-08 62.4 95 31.6
Aa31sc404G30 Aethionema arabicum HOM05D000003 ORTHO05D009772 3.6e-08 62.0 81 35.8
BcaB02g06876 Brassica carinata HOM05D000003 ORTHO05D009772 3.6e-08 62.0 89 36.0
BraA01t02856Z Brassica rapa HOM05D000003 ORTHO05D009772 3.6e-08 62.0 74 41.9
Aa31LG10G2340 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-08 61.6 77 40.3
Aa31LG9G15190 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.2e-08 61.2 86 36.0
BcaB01g02217 Brassica carinata HOM05D000003 ORTHO05D009772 8.1e-08 60.8 73 39.7
BcaC03g15572 Brassica carinata HOM05D000003 ORTHO05D009772 8.1e-08 60.8 74 36.5
Aa31LG8G12700 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 102 31.4
Aa31sc730G50 Aethionema arabicum HOM05D000003 ORTHO05D009772 1.1e-07 60.5 78 41.0
BcaNung00257 Brassica carinata HOM05D000003 ORTHO05D021580 1.1e-07 60.5 96 34.4
Aa31LG9G9420 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 98 31.6
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.8e-07 59.7 77 41.6
Sp6g13220 Schrenkiella parvula HOM05D000003 ORTHO05D000006 3.1e-07 58.9 74 39.2
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.0e-07 58.5 78 39.7
Aa31LG4G7560 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.0e-07 58.5 70 42.9
BcaC05g28305 Brassica carinata HOM05D000003 ORTHO05D001091 4.0e-07 58.5 83 38.6
BolC4t28430H Brassica oleracea HOM05D000003 ORTHO05D009772 4.0e-07 58.5 68 42.6
Aa31sc174G40 Aethionema arabicum HOM05D000003 ORTHO05D001498 5.2e-07 58.2 84 35.7
Aa31LG1G4840 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.8e-07 57.8 77 40.3
Aa31LG3G4270 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.8e-07 57.8 77 40.3
Aa31LG6G6890 Aethionema arabicum HOM05D000003 ORTHO05D001091 8.9e-07 57.4 86 36.0
AT4G29090 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 1.2e-06 57.0 79 35.4
Sp2g15540 Schrenkiella parvula HOM05D000003 ORTHO05D009772 1.2e-06 57.0 61 45.9
Aa31LG3G5890 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 105 30.5
Aa31sc222G50 Aethionema arabicum HOM05D000003 ORTHO05D001091 1.5e-06 56.6 66 43.9
Sp4g07090 Schrenkiella parvula HOM05D000003 ORTHO05D009772 1.5e-06 56.6 97 28.9
AL3G29100 Arabidopsis lyrata HOM05D000003 ORTHO05D009772 2.0e-06 56.2 50 50.0
Aa31LG11G9070 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-06 55.8 68 38.2
BcaB06g28514 Brassica carinata HOM05D001239 ORTHO05D000925 2.6e-06 55.8 86 32.6
AT2G34320 Arabidopsis thaliana HOM05D000003 ORTHO05D001091 3.4e-06 55.5 77 35.1
Aa31LG7G3480 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.4e-06 55.1 77 36.4
BcaB07g30912 Brassica carinata HOM05D000496 ORTHO05D000411 4.4e-06 55.1 92 28.3
Aa31LG5G21780 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.8e-06 54.7 73 37.0
BraA03t15429Z Brassica rapa HOM05D001239 ORTHO05D000925 5.8e-06 54.7 77 37.7
Aa31LG8G11140 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-06 53.9 75 37.3
Aa31sc142G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-06 53.9 69 40.6
Aa31sc2056G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-06 53.9 65 43.1


User provided reference genes

Program Settings