Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27144 Brassica carinata HOM05D000725 ORTHO05D003141 3.0e-96 355.1 176 100.0
BcaB04g17070 Brassica carinata HOM05D000725 ORTHO05D003141 1.0e-56 223.8 176 72.7
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 1.7e-35 153.3 99 81.8
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 1.5e-34 150.2 97 79.4
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 5.6e-34 148.3 97 79.4
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 5.6e-34 148.3 97 79.4
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 1.2e-33 147.1 97 78.4
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 1.6e-33 146.7 97 78.4
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 4.7e-33 145.2 98 76.5
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 8.1e-33 144.4 98 76.5
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 1.8e-32 143.3 99 74.7
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 1.2e-31 140.6 99 73.7
CARHR112360 Cardamine hirsuta HOM05D000725 ORTHO05D003141 5.8e-31 138.3 99 72.7
Thhalv10000722m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 5.8e-31 138.3 98 73.5
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 1.6e-17 93.6 92 47.8
Aa31LG7G15070 Aethionema arabicum HOM05D000725 ORTHO05D003141 2.1e-17 93.2 94 56.4
THA.LOC104807870 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 3.4e-15 85.9 95 52.6
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 4.5e-15 85.5 93 51.6
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 2.2e-14 83.2 93 47.3
Nn1g05795 Nelumbo nucifera HOM05D000725 ORTHO05D003141 3.8e-14 82.4 92 45.7
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 4.9e-14 82.0 135 35.6
MD05G1059900 Malus domestica HOM05D000725 ORTHO05D003141 8.4e-14 81.3 93 46.2
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 4.2e-13 79.0 135 34.8
CDE03G0361 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 1.6e-12 77.0 92 42.4
AUR62016778 Chenopodium quinoa HOM05D000725 ORTHO05D003141 2.7e-12 76.3 94 43.6
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 3.5e-12 75.9 135 35.6
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 4.6e-12 75.5 93 44.1
Actinidia11756 Actinidia chinensis HOM05D000725 ORTHO05D003141 4.6e-12 75.5 93 46.2
AUR62011279 Chenopodium quinoa HOM05D000725 ORTHO05D003141 4.6e-12 75.5 94 42.6
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 4.6e-12 75.5 92 42.4
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 4.6e-12 75.5 95 46.3
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 7.9e-12 74.7 135 34.8
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 1.0e-11 74.3 91 44.0
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 1.0e-11 74.3 92 42.4
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 1.3e-11 73.9 93 45.2
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 1.8e-11 73.6 93 46.2
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 2.3e-11 73.2 93 41.9
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 2.3e-11 73.2 90 38.9
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 3.0e-11 72.8 94 41.5
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 3.0e-11 72.8 93 46.2
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 3.9e-11 72.4 94 44.7
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 3.9e-11 72.4 92 41.3
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 3.9e-11 72.4 94 42.6
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 3.9e-11 72.4 91 42.9
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 5.1e-11 72.0 94 41.5
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 8.7e-11 71.2 93 45.2
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 1.1e-10 70.9 93 40.9
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 1.1e-10 70.9 92 39.1
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.5e-10 70.5 95 43.2
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 1.5e-10 70.5 93 44.1
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.5e-10 70.5 93 44.1
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 1.9e-10 70.1 97 43.3
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 2.5e-10 69.7 93 44.1
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 3.3e-10 69.3 93 47.3
Sp3g29660 Schrenkiella parvula HOM05D000725 ORTHO05D003141 5.6e-10 68.6 91 45.1
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 7.4e-10 68.2 95 42.1
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 7.4e-10 68.2 93 44.1
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 7.4e-10 68.2 93 44.1
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 9.6e-10 67.8 96 40.6
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 9.6e-10 67.8 96 40.6
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 9.6e-10 67.8 93 44.1
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 9.6e-10 67.8 93 43.0
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 9.6e-10 67.8 91 41.8
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 1.3e-09 67.4 93 43.0
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 1.3e-09 67.4 93 41.9
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 1.6e-09 67.0 91 42.9
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 1.6e-09 67.0 93 43.0
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 2.1e-09 66.6 93 44.1
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 2.1e-09 66.6 91 41.8
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 2.1e-09 66.6 91 45.1
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 2.1e-09 66.6 91 41.8
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 2.8e-09 66.2 93 44.1
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 3.7e-09 65.9 93 44.1
unitig_21.g20795 Utricularia gibba HOM05D000725 ORTHO05D003141 3.7e-09 65.9 97 42.3
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 4.8e-09 65.5 93 44.1
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 4.8e-09 65.5 93 43.0
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 6.2e-09 65.1 97 44.3
Lsat_1_v5_gn_9_107821 Lactuca sativa HOM05D000725 ORTHO05D003141 6.2e-09 65.1 93 46.2
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 6.2e-09 65.1 93 39.8
vmacro17927 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 6.2e-09 65.1 93 43.0
Aa31LG8G13750 Aethionema arabicum HOM05D000725 ORTHO05D003141 1.1e-08 64.3 91 40.7
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 1.1e-08 64.3 93 43.0
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 1.1e-08 64.3 93 40.9
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.1e-08 64.3 93 41.9
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.1e-08 64.3 93 41.9
HPP92_022391 Vanilla planifolia HOM05D000725 ORTHO05D003141 1.1e-08 64.3 93 39.8
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 1.4e-08 63.9 93 44.1
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 1.4e-08 63.9 93 44.1
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 1.8e-08 63.5 93 44.1
Zm00001eb416780 Zea mays HOM05D000725 ORTHO05D003141 1.8e-08 63.5 90 41.1
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 4.0e-08 62.4 91 41.8
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 4.0e-08 62.4 91 41.8
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 4.0e-08 62.4 91 41.8
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 4.0e-08 62.4 91 41.8
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 4.0e-08 62.4 91 41.8
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 4.0e-08 62.4 92 38.0
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 4.0e-08 62.4 93 40.9
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 4.0e-08 62.4 94 40.4
Thhalv10022532m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 4.0e-08 62.4 91 41.8
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 4.0e-08 62.4 94 40.4
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 5.3e-08 62.0 91 39.6
Haze_02328 Corylus avellana HOM05D000725 ORTHO05D003141 5.3e-08 62.0 93 43.0
Haze_02329 Corylus avellana HOM05D000725 ORTHO05D003141 5.3e-08 62.0 93 43.0
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 5.3e-08 62.0 94 40.4
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.3e-08 62.0 93 40.9
Lsat_1_v5_gn_5_120421 Lactuca sativa HOM05D000725 ORTHO05D003141 5.3e-08 62.0 93 40.9
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 5.3e-08 62.0 93 46.2
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 6.9e-08 61.6 93 43.0
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 6.9e-08 61.6 93 41.9
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 6.9e-08 61.6 93 44.1
BcaC01g06656 Brassica carinata HOM05D009403 ORTHO05D013517 9.0e-08 61.2 37 81.1
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 9.0e-08 61.2 94 40.4
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 9.0e-08 61.2 93 40.9
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 9.0e-08 61.2 91 38.5
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 1.2e-07 60.8 93 40.9
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 1.2e-07 60.8 94 40.4
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 1.5e-07 60.5 94 39.4
BcaB08g34646 Brassica carinata HOM05D000725 ORTHO05D003141 1.5e-07 60.5 91 40.7
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 1.5e-07 60.5 93 39.8
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 1.5e-07 60.5 93 40.9
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 1.5e-07 60.5 93 41.9
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 1.5e-07 60.5 93 41.9
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 1.5e-07 60.5 98 39.8
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 2.0e-07 60.1 91 42.9
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 2.0e-07 60.1 91 39.6
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 2.0e-07 60.1 93 43.0
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 2.0e-07 60.1 93 41.9
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 2.0e-07 60.1 91 39.6
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 2.0e-07 60.1 93 40.9
Zm00001eb173050 Zea mays HOM05D000725 ORTHO05D003141 2.0e-07 60.1 90 38.9
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 2.6e-07 59.7 91 39.6
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 2.6e-07 59.7 94 39.4
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 2.6e-07 59.7 139 35.3
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 2.6e-07 59.7 93 39.8
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 2.6e-07 59.7 94 39.4
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 3.4e-07 59.3 93 40.9
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 3.4e-07 59.3 138 31.2
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 3.4e-07 59.3 93 41.9
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 4.5e-07 58.9 137 31.4
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 4.5e-07 58.9 137 32.8
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 7.6e-07 58.2 134 33.6
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 7.6e-07 58.2 93 37.6
Os06g0255700 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 7.6e-07 58.2 90 34.4
Os07g0434500 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 9.9e-07 57.8 90 34.4
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 9.9e-07 57.8 97 36.1
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 1.3e-06 57.4 97 37.1
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 1.3e-06 57.4 93 40.9
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 1.3e-06 57.4 93 38.7
BcaB03g11813 Brassica carinata HOM05D009403 ORTHO05D013517 1.7e-06 57.0 37 75.7
COL.COLO4_25996 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.7e-06 57.0 93 34.4
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 1.7e-06 57.0 93 37.6
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 1.7e-06 57.0 93 37.6
Os03g0165266 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 1.7e-06 57.0 92 37.0
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 2.2e-06 56.6 93 39.8
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 2.2e-06 56.6 94 37.2
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 2.2e-06 56.6 93 37.6
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 2.2e-06 56.6 91 37.4
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 2.2e-06 56.6 95 38.9
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 3.8e-06 55.8 93 37.6
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 3.8e-06 55.8 91 37.4
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 4.9e-06 55.5 137 30.7
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 8.4e-06 54.7 137 29.9
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 8.4e-06 54.7 137 29.9
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 8.4e-06 54.7 137 29.9
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 8.4e-06 54.7 94 36.2


User provided reference genes

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