Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 0.0e+00 1186.8 878 100.0
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.8e-274 949.5 794 83.4
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 3.1e-274 948.7 794 82.2
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.1e-271 940.3 793 83.0
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.3e-261 906.7 889 78.7
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 6.7e-261 904.4 889 78.9
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.2e-255 885.6 760 77.0
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 3.8e-248 862.1 581 83.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 3.0e-237 825.9 611 80.9
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 5.9e-233 811.6 615 79.5
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.0e-229 800.8 607 78.3
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 8.2e-227 791.2 606 77.9
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.8e-205 720.3 587 72.1
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.5e-183 646.7 616 65.9
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.1e-181 641.3 614 63.2
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.3e-179 634.4 546 67.0
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.6e-177 627.5 583 65.4
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.1e-175 621.3 580 65.5
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 4.4e-172 609.4 583 66.6
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.9e-171 606.7 627 60.4
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.4e-170 604.4 571 64.6
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.9e-170 604.0 542 66.1
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-169 601.3 624 61.2
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.6e-169 600.9 624 61.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.6e-169 599.4 579 62.7
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.8e-169 598.6 580 63.3
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.3e-168 597.8 611 60.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 8.6e-168 595.1 586 62.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.5e-167 594.3 628 59.9
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-166 591.3 519 68.6
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.1e-166 590.5 616 60.4
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.1e-166 590.5 546 64.3
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 2.1e-166 590.5 573 61.8
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 3.6e-166 589.7 611 62.5
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.1e-166 588.6 523 67.7
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.4e-165 587.8 616 60.1
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.8e-165 587.4 500 68.4
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 2.4e-165 587.0 551 63.2
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 6.8e-165 585.5 581 61.4
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 6.8e-165 585.5 595 62.7
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 2.6e-164 583.6 500 68.2
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 5.8e-164 582.4 612 60.5
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 9.9e-164 581.6 548 61.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.3e-163 581.3 612 59.5
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.7e-163 580.9 557 63.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.9e-163 580.1 581 61.1
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 2.9e-163 580.1 615 60.5
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.1e-162 578.2 611 61.9
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.4e-162 577.0 578 61.4
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 3.5e-161 573.2 596 60.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 3.5e-161 573.2 578 61.1
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 7.8e-161 572.0 516 65.1
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 6.6e-160 568.9 579 62.7
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.1e-159 568.2 530 62.8
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.1e-159 568.2 617 59.0
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.5e-159 567.8 525 65.3
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 9.6e-159 565.1 513 65.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 9.6e-159 565.1 552 62.7
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 2.1e-158 563.9 608 58.4
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 4.7e-158 562.8 583 62.6
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.2e-158 562.4 653 57.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 5.2e-157 559.3 514 64.4
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 6.9e-157 558.9 527 62.8
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 9.0e-157 558.5 571 59.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 4.4e-156 556.2 497 65.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 7.6e-156 555.4 580 60.5
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.3e-155 554.7 523 63.9
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 3.8e-155 553.1 617 59.5
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 8.4e-155 552.0 572 60.8
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.1e-154 551.6 584 58.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 9.3e-154 548.5 501 63.9
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.2e-153 548.1 615 57.9
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.1e-152 542.7 524 63.5
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.1e-152 542.7 523 63.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.9e-151 540.8 608 57.4
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.8e-150 537.0 596 55.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.2e-150 535.8 523 62.9
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 8.1e-150 535.4 606 56.9
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.1e-149 533.5 608 56.9
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 3.1e-149 533.5 574 61.0
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.9e-149 532.3 606 56.8
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.2e-148 531.6 621 56.0
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.5e-148 531.2 608 56.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.6e-148 530.4 583 58.3
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 7.6e-148 528.9 544 58.6
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.2e-145 521.5 542 60.0
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.1e-145 520.8 542 59.8
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 6.0e-145 519.2 524 60.7
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.8e-144 517.7 588 57.0
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.1e-142 510.8 614 55.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.1e-141 508.4 512 59.2
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.8e-141 507.7 573 56.2
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 3.1e-141 506.9 499 60.5
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.8e-139 500.0 516 58.5
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.4e-133 481.5 588 54.8
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 3.8e-131 473.4 637 53.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 5.9e-124 449.5 552 54.0
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 3.2e-122 443.7 552 53.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.1e-119 435.3 532 55.1
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.9e-115 420.6 582 50.9
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.4e-114 418.3 570 53.5
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 3.3e-111 407.1 432 61.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 4.8e-110 403.3 594 49.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 2.4e-109 401.0 552 50.0
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.2e-108 398.7 399 66.7
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 8.0e-105 386.0 424 61.1
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.1e-103 382.1 546 48.5
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.3e-102 376.3 300 69.7
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.6e-97 361.7 322 62.1
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-86 325.5 274 75.5
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.8e-85 321.6 226 72.1
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 9.1e-85 319.3 539 44.7
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.6e-73 282.0 542 38.6
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 3.5e-68 264.2 251 70.9
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.2e-63 249.2 492 39.4
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.3e-62 245.7 516 38.6
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 6.6e-59 233.4 321 45.8
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 9.9e-55 219.5 288 55.9
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.9e-53 215.3 179 63.1
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 3.9e-51 207.6 208 62.5
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 6.2e-49 200.3 184 59.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.1e-48 199.5 234 62.8
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 1.6e-36 159.1 110 79.1
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 3.0e-35 154.8 513 44.4
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 8.1e-33 146.7 379 41.2
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 9.0e-32 143.3 299 41.1
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 6.0e-28 130.6 116 65.5
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.8e-25 121.7 116 63.8
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 4.8e-25 120.9 78 79.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 1.3e-19 102.8 68 75.0
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 2.8e-17 95.1 89 66.3
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 4.0e-16 91.3 67 67.2
BcaC03g15750 Brassica carinata HOM05D005307 ORTHO05D027550 2.0e-15 89.0 177 47.5
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.3e-14 86.3 263 34.6
BolC2t09504H Brassica oleracea HOM05D005307 ORTHO05D027550 2.2e-14 85.5 177 46.3
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.3e-11 76.3 144 41.7
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 3.9e-11 74.7 75 72.0
C01p16760 Brassica napus HOM05D019998 ORTHO05D021590 5.1e-11 74.3 47 74.5
BolC1t01620H Brassica oleracea HOM05D019998 ORTHO05D021590 5.1e-11 74.3 47 74.5
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 1.1e-10 73.2 416 25.5
C03p67510 Brassica napus HOM05D019998 ORTHO05D021590 1.9e-10 72.4 47 74.5
BolSC21t60274H Brassica oleracea HOM05D019998 ORTHO05D021590 1.9e-10 72.4 47 74.5
BcaC09g51115 Brassica carinata HOM05D019998 ORTHO05D021590 6.3e-09 67.4 47 72.3
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.4e-08 66.2 117 51.3
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 1.8e-08 65.9 90 53.3
BcaC01g02240 Brassica carinata HOM05D019998 ORTHO05D021590 9.0e-08 63.5 44 68.2
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 2.0e-07 62.4 421 25.7
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 1.7e-06 59.3 118 53.4


User provided reference genes

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