Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.1e-91 339.0 169 100.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-84 315.1 169 92.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-84 315.1 169 92.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.3e-84 315.1 169 92.3
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 6.9e-82 307.4 170 91.8
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.0e-80 303.5 170 90.0
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.4e-73 278.5 169 81.7
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.2e-70 270.0 162 80.2
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.2e-70 270.0 162 80.2
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 4.7e-70 268.1 162 80.2
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 4.7e-70 268.1 162 80.2
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 4.7e-70 268.1 162 80.2
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 4.7e-70 268.1 162 80.2
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.0e-64 250.4 164 75.0
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 9.4e-63 243.8 160 76.9
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.6e-62 243.0 171 70.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.8e-61 239.6 164 72.0
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 9.7e-60 233.8 163 69.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.5e-52 209.9 173 65.3
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.2e-51 206.1 153 66.0
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.8e-51 204.9 165 67.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.5e-49 198.7 157 61.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 7.2e-47 191.0 161 56.5
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.6e-46 189.9 150 56.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.6e-46 189.9 157 59.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.7e-46 189.1 170 55.3
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 4.7e-46 188.3 133 63.9
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.4e-45 186.8 150 55.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.8e-45 186.4 150 56.0
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.3e-45 186.0 161 56.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.8e-45 184.1 161 54.7
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 8.8e-45 184.1 145 55.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.6e-44 182.6 136 61.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.4e-44 182.2 161 57.1
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.4e-44 181.8 163 55.2
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.7e-44 181.4 120 66.7
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 5.7e-44 181.4 191 49.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.7e-44 181.4 143 55.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 5.7e-44 181.4 155 56.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.7e-44 181.4 155 56.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.7e-44 181.4 126 61.1
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.7e-44 181.4 123 66.7
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 7.5e-44 181.0 155 55.5
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.5e-44 181.0 155 55.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.5e-44 181.0 156 56.4
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 7.5e-44 181.0 155 56.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 9.8e-44 180.6 164 50.6
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.3e-43 180.3 161 55.3
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.3e-43 180.3 161 54.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.7e-43 179.9 191 48.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.7e-43 179.9 161 54.7
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.7e-43 179.9 124 62.9
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.2e-43 179.5 160 57.5
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.2e-43 179.5 138 61.6
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 2.2e-43 179.5 167 54.5
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.2e-43 179.5 159 57.9
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.8e-43 179.1 160 56.9
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.8e-43 179.1 163 55.8
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.8e-43 179.1 161 53.4
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.8e-43 179.1 158 57.0
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 3.7e-43 178.7 181 49.2
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.7e-43 178.7 155 59.4
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.3e-43 177.6 155 54.8
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-42 177.2 157 55.4
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-42 176.8 158 55.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.8e-42 176.4 133 58.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.8e-42 176.4 156 52.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.4e-42 176.0 154 52.6
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-42 175.6 157 54.8
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-42 175.6 158 56.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 5.4e-42 174.9 153 54.2
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.4e-42 174.9 155 58.7
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.0e-42 174.5 112 67.0
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.0e-42 174.5 113 68.1
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 7.0e-42 174.5 164 53.7
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 7.0e-42 174.5 164 53.7
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 9.1e-42 174.1 155 54.8
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 9.1e-42 174.1 155 55.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 9.1e-42 174.1 160 56.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.1e-42 174.1 165 54.5
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.6e-41 173.3 159 51.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.6e-41 173.3 157 54.1
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 2.0e-41 172.9 162 50.6
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.0e-41 172.9 165 52.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.0e-41 172.9 123 61.8
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 4.5e-41 171.8 160 55.0
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 4.5e-41 171.8 135 59.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 7.7e-41 171.0 123 61.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 7.7e-41 171.0 123 60.2
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.0e-40 170.6 120 61.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.3e-40 169.5 126 59.5
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.3e-40 169.5 154 50.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-40 169.5 152 53.3
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 2.9e-40 169.1 160 50.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 5.0e-40 168.3 165 50.3
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 5.0e-40 168.3 138 56.5
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-39 167.2 138 55.1
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-39 167.2 138 55.1
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.1e-39 167.2 116 60.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-39 167.2 160 53.8
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-39 166.8 113 68.1
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.5e-39 166.0 119 59.7
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.2e-39 165.2 116 62.9
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.6e-38 163.3 163 50.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.1e-38 162.9 120 59.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-38 162.9 113 66.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 6.1e-38 161.4 149 53.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 8.0e-38 161.0 124 56.5
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-37 160.2 164 50.0
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.4e-37 160.2 123 56.1
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.8e-37 159.8 164 48.8
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.8e-37 159.8 123 61.0
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.0e-37 158.7 158 51.3
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 8.9e-37 157.5 125 57.6
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-36 157.1 124 53.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.5e-36 156.8 127 55.9
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.0e-36 156.4 123 57.7
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.0e-36 156.4 127 55.9
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.0e-36 156.4 132 54.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 5.7e-36 154.8 159 50.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-35 153.7 129 53.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-35 153.3 112 61.6
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.8e-35 152.5 166 48.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 3.7e-35 152.1 128 53.1
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 4.9e-35 151.8 170 48.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.3e-35 151.0 121 54.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-34 150.6 128 53.1
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.4e-34 150.2 158 46.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.8e-34 149.8 153 47.7
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 4.1e-34 148.7 153 46.4
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.1e-34 148.7 153 47.7
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.0e-33 146.4 160 46.9
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 2.3e-32 142.9 134 49.3
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.3e-32 142.9 153 46.4
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.9e-32 142.1 103 62.1
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 5.6e-31 138.3 123 48.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 7.3e-31 137.9 132 49.2
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.1e-30 134.8 113 54.9
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 8.0e-30 134.4 159 44.0
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.8e-29 133.3 160 46.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.8e-29 131.3 131 45.8
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.0e-28 129.8 114 46.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 5.8e-28 128.3 122 46.7
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 7.0e-26 121.3 113 46.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 6.0e-25 118.2 95 54.7
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 3.9e-24 115.5 114 43.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 8.6e-24 114.4 119 47.9
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.5e-23 113.6 110 48.2
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.9e-23 113.2 88 56.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.3e-23 112.5 84 59.5
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.3e-23 112.1 95 54.7
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 5.6e-23 111.7 121 41.3
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 7.3e-23 111.3 123 43.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 7.3e-23 111.3 123 43.9
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.6e-22 109.0 112 44.6
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 6.2e-22 108.2 114 43.9
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.4e-21 107.1 118 42.4
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.4e-21 107.1 109 46.8
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.2e-21 105.1 119 40.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.4e-20 102.1 107 43.0
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 5.8e-20 101.7 123 39.8
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.9e-19 99.4 93 52.7
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-18 97.4 73 58.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.4e-18 96.3 124 41.1
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 3.0e-16 89.4 76 56.6
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.6e-15 85.1 68 54.4
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.8e-14 82.8 74 54.1
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.3e-11 73.9 123 33.3
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 4.1e-10 68.9 65 46.2
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 8.6e-08 61.2 111 34.2
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.5e-07 57.8 42 57.1
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.2e-06 57.4 50 52.0


User provided reference genes

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