Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26291 Brassica carinata HOM05D001117 ORTHO05D000930 1.7e-60 235.7 109 100.0
C05p41490 Brassica napus HOM05D001117 ORTHO05D000930 6.3e-44 180.6 119 77.3
BolC5t32888H Brassica oleracea HOM05D001117 ORTHO05D000930 6.3e-44 180.6 119 77.3
BcaC05g28119 Brassica carinata HOM05D001117 ORTHO05D000930 5.3e-43 177.6 119 76.5
A01p33090 Brassica napus HOM05D001117 ORTHO05D000930 7.7e-42 173.7 119 72.3
BraA01t03432Z Brassica rapa HOM05D001117 ORTHO05D000930 7.7e-42 173.7 119 72.3
BcaB04g20553 Brassica carinata HOM05D001117 ORTHO05D000930 8.5e-41 170.2 119 70.6
BcaC09g49131 Brassica carinata HOM05D001117 ORTHO05D000930 5.5e-40 167.5 112 74.1
C01p42320 Brassica napus HOM05D001117 ORTHO05D000930 5.5e-40 167.5 112 74.1
BolC1t04187H Brassica oleracea HOM05D001117 ORTHO05D000930 5.5e-40 167.5 112 74.1
Sp3g19860 Schrenkiella parvula HOM05D001117 ORTHO05D000930 2.1e-39 165.6 113 73.5
Thhalv10021966m.g Eutrema salsugineum HOM05D001117 ORTHO05D000930 3.6e-39 164.9 124 68.5
BcaC09g49132 Brassica carinata HOM05D001117 ORTHO05D000930 6.1e-39 164.1 107 74.8
CARHR097850 Cardamine hirsuta HOM05D001117 ORTHO05D000930 1.4e-30 136.3 115 60.0
AL3G36050 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 2.0e-29 132.5 124 63.7
AL3G36070 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 2.0e-29 132.5 124 63.7
AT3G21890 Arabidopsis thaliana HOM05D001117 ORTHO05D000930 5.7e-29 131.0 122 63.1
Carub.0003s2196 Capsella rubella HOM05D001117 ORTHO05D000930 4.8e-28 127.9 124 58.9
Aa31LG8G8450 Aethionema arabicum HOM05D001117 ORTHO05D000930 2.9e-25 118.6 113 56.6
Carub.0007s2670 Capsella rubella HOM05D001117 ORTHO05D000930 5.2e-22 107.8 106 53.8
AL7G40380 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 5.7e-21 104.4 107 52.3
AT4G15248 Arabidopsis thaliana HOM05D001117 ORTHO05D000930 5.7e-21 104.4 96 57.3
Aa31LG9G2180 Aethionema arabicum HOM05D001117 ORTHO05D000930 3.1e-19 98.6 99 52.5
CARHR221970 Cardamine hirsuta HOM05D001117 ORTHO05D000930 1.2e-18 96.7 101 50.5
Sp7g13460 Schrenkiella parvula HOM05D001117 ORTHO05D000930 2.0e-18 95.9 109 48.6
BcaNung00293 Brassica carinata HOM05D001117 ORTHO05D000930 7.8e-18 94.0 102 49.0
BolC1t02717H Brassica oleracea HOM05D001117 ORTHO05D000930 2.3e-17 92.4 102 47.1
A01p22290 Brassica napus HOM05D001117 ORTHO05D000930 3.8e-17 91.7 102 47.1
BraA01t02145Z Brassica rapa HOM05D001117 ORTHO05D000930 3.8e-17 91.7 102 47.1
BcaC09g50207 Brassica carinata HOM05D001117 ORTHO05D000930 5.0e-17 91.3 102 47.1
C01p27830 Brassica napus HOM05D001117 ORTHO05D000930 5.0e-17 91.3 102 47.1
THA.LOC104821750 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 2.5e-16 89.0 118 44.9
Gohir.D12G138600 Gossypium hirsutum HOM05D001117 ORTHO05D000930 1.5e-13 79.7 101 43.6
Gorai.008G150000 Gossypium raimondii HOM05D001117 ORTHO05D000930 1.5e-13 79.7 101 43.6
Gohir.A12G134900 Gossypium hirsutum HOM05D001117 ORTHO05D000930 4.4e-13 78.2 101 42.6
Cc05_g05180 Coffea canephora HOM05D001117 ORTHO05D000930 1.3e-12 76.6 114 38.6
MELO3C018801.2 Cucumis melo HOM05D001117 ORTHO05D000930 4.9e-12 74.7 103 42.7
ClCG02G001760 Citrullus lanatus HOM05D001117 ORTHO05D000930 6.4e-12 74.3 104 41.3
Peaxi162Scf00007g10129 Petunia axillaris HOM05D001117 ORTHO05D000930 1.4e-11 73.2 115 39.1
Cpa.g.sc8.240 Carica papaya HOM05D001117 ORTHO05D000930 1.9e-11 72.8 121 37.2
Haze_12903 Corylus avellana HOM05D001117 ORTHO05D000930 1.9e-11 72.8 129 38.8
Potri.017G039400 Populus trichocarpa HOM05D001117 ORTHO05D000930 1.9e-11 72.8 96 41.7
Medtr4g046640 Medicago truncatula HOM05D001117 ORTHO05D000930 2.4e-11 72.4 104 38.5
Cfa014442 Carpinus fangiana HOM05D001117 ORTHO05D000930 3.2e-11 72.0 119 42.0
TWI36G0911 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 3.2e-11 72.0 115 40.0
Gohir.D02G186700 Gossypium hirsutum HOM05D001117 ORTHO05D000930 4.1e-11 71.6 105 39.0
Gorai.005G209000 Gossypium raimondii HOM05D001117 ORTHO05D000930 4.1e-11 71.6 105 39.0
Manes.13G073800 Manihot esculenta HOM05D001117 ORTHO05D000930 4.1e-11 71.6 102 42.2
Rhsim04G0056900 Rhododendron simsii HOM05D001117 ORTHO05D000930 7.0e-11 70.9 72 47.2
Rhsim06G0157700 Rhododendron simsii HOM05D001117 ORTHO05D000930 7.0e-11 70.9 104 43.3
Gohir.A03G163300 Gossypium hirsutum HOM05D001117 ORTHO05D000930 9.2e-11 70.5 105 38.1
TPR.G19055 Trifolium pratense HOM05D001117 ORTHO05D000930 1.2e-10 70.1 116 38.8
CiPaw.03G163400 Carya illinoinensis HOM05D001117 ORTHO05D000930 1.6e-10 69.7 101 40.6
Potri.007G121100 Populus trichocarpa HOM05D001117 ORTHO05D000930 1.6e-10 69.7 98 38.8
QL08p033897 Quercus lobata HOM05D001117 ORTHO05D000930 1.6e-10 69.7 96 43.8
CSS0013458 Camellia sinensis var. sinensis HOM05D001117 ORTHO05D000930 2.0e-10 69.3 128 35.9
Sabra07G0098100 Salix brachista HOM05D001117 ORTHO05D000930 2.0e-10 69.3 75 45.3
CSS0027760 Camellia sinensis var. sinensis HOM05D001117 ORTHO05D000930 2.7e-10 68.9 100 39.0
Eucgr.K00864 Eucalyptus grandis HOM05D001117 ORTHO05D000930 2.7e-10 68.9 130 36.2
ClCG02G008410 Citrullus lanatus HOM05D001117 ORTHO05D000930 3.5e-10 68.6 127 36.2
CsaV3_7G003780 Cucumis sativus L. HOM05D001117 ORTHO05D000930 4.6e-10 68.2 105 41.9
TAR627G0659 Trochodendron aralioides HOM05D001117 ORTHO05D000930 4.6e-10 68.2 80 47.5
Nitab4.5_0001680g0030 Nicotiana tabacum HOM05D001117 ORTHO05D000930 6.0e-10 67.8 67 49.3
COL.COLO4_12999 Corchorus olitorius HOM05D001117 ORTHO05D000930 7.8e-10 67.4 114 38.6
CsaV3_2G035230 Cucumis sativus L. HOM05D001117 ORTHO05D000930 7.8e-10 67.4 106 39.6
MD09G1104600 Malus domestica HOM05D001117 ORTHO05D000930 7.8e-10 67.4 104 42.3
Thecc.02G162800 Theobroma cacao HOM05D001117 ORTHO05D000930 1.3e-09 66.6 97 38.1
arahy.Tifrunner.gnm1.ann1.7LA68K Arachis hypogaea HOM05D001117 ORTHO05D000930 1.7e-09 66.2 64 51.6
MD17G1092200 Malus domestica HOM05D001117 ORTHO05D000930 1.7e-09 66.2 101 41.6
Actinidia30506 Actinidia chinensis HOM05D001117 ORTHO05D000930 2.3e-09 65.9 101 38.6
Dinv18533 Davidia involucrata HOM05D001117 ORTHO05D000930 2.3e-09 65.9 100 40.0
Lalb_Chr22g0349601 Lupinus albus HOM05D001117 ORTHO05D000930 3.0e-09 65.5 115 39.1
Nitab4.5_0002949g0020 Nicotiana tabacum HOM05D001117 ORTHO05D000930 3.9e-09 65.1 76 46.1
Sopen07g026230 Solanum pennellii HOM05D001117 ORTHO05D000930 3.9e-09 65.1 108 38.0
Gohir.A04G107400 Gossypium hirsutum HOM05D001117 ORTHO05D000930 5.0e-09 64.7 127 34.6
Gohir.D04G147300 Gossypium hirsutum HOM05D001117 ORTHO05D000930 5.0e-09 64.7 101 38.6
Hma1.2p1_0613F.1_g189230 Hydrangea macrophylla HOM05D001117 ORTHO05D000930 5.0e-09 64.7 69 49.3
Manes.12G078100 Manihot esculenta HOM05D001117 ORTHO05D000930 5.0e-09 64.7 93 40.9
Solyc07g052620.1 Solanum lycopersicum HOM05D001117 ORTHO05D000930 5.0e-09 64.7 108 37.0
Gorai.012G133300 Gossypium raimondii HOM05D001117 ORTHO05D000930 6.6e-09 64.3 101 37.6
Phvul.005G113200 Phaseolus vulgaris HOM05D001117 ORTHO05D000930 6.6e-09 64.3 99 43.4
Sed0001811 Sechium edule HOM05D001117 ORTHO05D000930 8.6e-09 63.9 104 37.5
Glyma.12G196200 Glycine max HOM05D001117 ORTHO05D000930 1.1e-08 63.5 98 39.8
Oeu041953.1 Olea europaea HOM05D001117 ORTHO05D000930 1.1e-08 63.5 100 38.0
Atru.chr6.3138 Acer truncatum HOM05D001117 ORTHO05D000930 1.5e-08 63.2 68 50.0
Glyma.13G306300 Glycine max HOM05D001117 ORTHO05D000930 1.5e-08 63.2 100 41.0
Lalb_Chr01g0005511 Lupinus albus HOM05D001117 ORTHO05D000930 1.5e-08 63.2 94 41.5
TAR636G2388 Trochodendron aralioides HOM05D001117 ORTHO05D000930 1.5e-08 63.2 80 46.2
CiPaw.04G118200 Carya illinoinensis HOM05D001117 ORTHO05D000930 1.9e-08 62.8 108 37.0
MELO3C019231.2 Cucumis melo HOM05D001117 ORTHO05D000930 1.9e-08 62.8 68 45.6
Sed0001274 Sechium edule HOM05D001117 ORTHO05D000930 1.9e-08 62.8 90 45.6
PGSC0003DMG400026169 Solanum tuberosum HOM05D001117 ORTHO05D000930 1.9e-08 62.8 82 47.6
VMungo1127G1677 Vigna mungo HOM05D001117 ORTHO05D000930 1.9e-08 62.8 95 40.0
DCAR_019775 Daucus carota HOM05D001117 ORTHO05D000930 2.5e-08 62.4 90 38.9
Lj3g0010117 Lotus japonicus HOM05D001117 ORTHO05D000930 2.5e-08 62.4 65 46.2
Sed0025411 Sechium edule HOM05D001117 ORTHO05D000930 3.3e-08 62.0 95 37.9
TPR.G4184 Trifolium pratense HOM05D001117 ORTHO05D000930 4.3e-08 61.6 96 39.6
CAN.G921.1 Capsicum annuum HOM05D001117 ORTHO05D000930 5.6e-08 61.2 81 44.4
Phvul.011G106300 Phaseolus vulgaris HOM05D001117 ORTHO05D000930 5.6e-08 61.2 108 35.2
Ciclev10017183m.g Citrus clementina HOM05D001117 ORTHO05D000930 9.5e-08 60.5 124 36.3
Migut.M00392 Erythranthe guttata HOM05D001117 ORTHO05D000930 9.5e-08 60.5 87 43.7
PGSC0003DMG400013178 Solanum tuberosum HOM05D001117 ORTHO05D000930 9.5e-08 60.5 93 38.7
Prupe.3G221100 Prunus persica HOM05D001117 ORTHO05D000930 1.6e-07 59.7 72 47.2
Sc12g0002400 Simmondsia chinensis HOM05D001117 ORTHO05D000930 3.6e-07 58.5 42 61.9
DCAR_019210 Daucus carota HOM05D001117 ORTHO05D000930 6.2e-07 57.8 136 32.4
CAN.G80.16 Capsicum annuum HOM05D001117 ORTHO05D000930 2.3e-06 55.8 73 41.1
Solyc12g005750.1 Solanum lycopersicum HOM05D001117 ORTHO05D000930 2.3e-06 55.8 96 37.5
Aqoxy1G03739 Aquilegia oxysepala HOM05D001117 ORTHO05D000930 3.1e-06 55.5 77 42.9
HanXRQChr10g0297441 Helianthus annuus HOM05D001117 ORTHO05D000930 3.1e-06 55.5 73 43.8
MBI02_g35707_MAGBIO Magnolia biondii HOM05D001117 ORTHO05D000930 3.1e-06 55.5 87 42.5
RcHm_v2.0_Chr2g0160161 Rosa chinensis HOM05D001117 ORTHO05D000930 3.1e-06 55.5 72 48.6
Zm00001eb233530 Zea mays HOM05D001117 ORTHO05D000930 3.1e-06 55.5 38 68.4
FvH4_6g43580 Fragaria vesca HOM05D001117 ORTHO05D000930 4.0e-06 55.1 72 44.4
FAN14G5585 Fragaria x ananassa HOM05D001117 ORTHO05D000930 4.0e-06 55.1 72 44.4
Nn8g40382 Nelumbo nucifera HOM05D001051 ORTHO05D000886 5.2e-06 54.7 60 45.0
PGR102G1110 Punica granatum HOM05D001117 ORTHO05D000930 6.8e-06 54.3 36 66.7


User provided reference genes

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