Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-96 355.1 190 100.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-96 355.1 190 100.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 7.0e-91 337.4 190 95.8
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-90 335.9 190 95.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-90 335.9 190 95.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.0e-90 335.9 190 95.3
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.4e-86 323.2 190 93.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.3e-86 322.4 190 92.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.0e-86 321.6 190 92.6
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 9.8e-85 317.0 190 91.6
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.2e-84 315.8 190 91.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.1e-83 313.5 190 88.9
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 4.1e-83 311.6 192 90.1
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.7e-73 279.6 192 82.8
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 5.6e-72 274.6 190 82.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-70 269.6 198 75.8
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.8e-70 269.6 196 77.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.4e-68 261.2 193 75.6
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 4.1e-67 258.5 189 76.2
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 9.2e-67 257.3 198 74.2
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-66 256.1 191 78.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 2.1e-66 256.1 191 78.0
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.1e-66 256.1 190 75.3
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.7e-66 255.8 191 77.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 2.7e-66 255.8 190 77.4
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 6.0e-66 254.6 192 71.9
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.8e-66 254.2 190 76.3
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-65 253.8 193 79.3
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.0e-65 253.8 190 74.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.3e-65 253.4 190 76.3
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.3e-65 252.7 196 74.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 3.9e-65 251.9 190 79.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 5.1e-65 251.5 190 76.3
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.1e-64 250.4 195 72.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.5e-64 250.0 191 74.9
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.9e-64 249.6 192 73.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.5e-64 249.2 197 73.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.5e-64 249.2 197 73.6
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.1e-63 246.1 193 71.5
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 2.1e-63 246.1 189 72.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.1e-63 246.1 194 74.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.8e-63 245.7 192 73.4
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 3.6e-63 245.4 191 75.4
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 6.2e-63 244.6 193 73.6
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 6.2e-63 244.6 192 70.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.4e-62 243.4 194 73.2
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.4e-62 243.4 192 71.9
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.8e-62 243.0 193 73.6
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.4e-62 242.7 191 72.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.4e-62 242.7 193 72.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.4e-62 242.7 193 71.5
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 3.1e-62 242.3 192 71.4
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.1e-62 242.3 192 71.4
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.1e-62 242.3 192 71.4
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 3.1e-62 242.3 192 73.4
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 4.0e-62 241.9 193 72.0
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.2e-62 241.5 188 75.0
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 5.2e-62 241.5 194 74.2
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 5.2e-62 241.5 197 69.5
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 6.8e-62 241.1 192 71.4
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 8.9e-62 240.7 219 63.9
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.2e-61 240.4 191 72.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.5e-61 240.0 193 71.5
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.0e-61 239.6 195 72.3
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.6e-61 239.2 193 71.5
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.6e-61 239.2 193 72.0
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 3.4e-61 238.8 195 72.3
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 3.4e-61 238.8 196 68.4
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 4.4e-61 238.4 190 70.0
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 5.8e-61 238.0 193 73.1
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 7.6e-61 237.7 231 64.1
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.2e-60 236.1 193 72.5
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.8e-60 235.3 190 70.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 3.8e-60 235.3 193 72.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 6.4e-60 234.6 199 70.4
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 6.4e-60 234.6 197 68.0
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 6.4e-60 234.6 192 70.8
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 8.4e-60 234.2 194 69.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 8.4e-60 234.2 193 70.5
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.1e-59 233.8 193 69.4
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.1e-59 233.8 168 78.0
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.4e-59 232.6 191 68.6
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.4e-59 232.6 193 67.4
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 3.2e-59 232.3 162 79.6
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.2e-59 232.3 191 66.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 7.1e-59 231.1 180 72.2
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 7.1e-59 231.1 192 69.8
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 9.3e-59 230.7 168 76.2
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.2e-58 230.3 186 70.4
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.6e-58 229.9 193 68.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.6e-58 228.4 193 66.3
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.3e-57 226.9 190 68.4
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.7e-57 226.5 192 68.8
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.7e-57 226.5 188 69.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.9e-57 225.3 194 68.0
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 6.6e-57 224.6 158 77.2
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 6.6e-57 224.6 189 68.8
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 8.7e-57 224.2 174 75.9
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.5e-56 223.4 209 66.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.3e-56 222.2 177 73.4
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 4.3e-56 221.9 189 68.3
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 5.6e-56 221.5 162 74.1
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 7.3e-56 221.1 220 59.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 9.6e-56 220.7 162 73.5
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.8e-55 219.2 162 75.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 6.2e-55 218.0 188 68.1
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 6.2e-55 218.0 124 89.5
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.1e-54 217.2 174 71.3
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.1e-54 217.2 152 78.3
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.4e-54 216.9 191 63.9
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.8e-54 216.5 194 64.4
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 3.1e-54 215.7 192 64.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 3.1e-54 215.7 126 88.1
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 4.0e-54 215.3 180 71.1
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 4.0e-54 215.3 195 65.1
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 6.9e-54 214.5 190 67.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 6.9e-54 214.5 144 79.9
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 9.0e-54 214.2 186 67.2
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 9.0e-54 214.2 125 88.0
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 9.0e-54 214.2 127 86.6
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-53 213.8 159 74.2
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.0e-53 213.0 127 84.3
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 4.4e-53 211.8 153 75.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 5.8e-53 211.5 132 84.1
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 7.6e-53 211.1 153 75.8
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 9.9e-53 210.7 153 75.8
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.7e-52 209.9 158 73.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.7e-50 202.6 166 69.9
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.1e-48 197.2 164 63.4
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.5e-48 196.8 137 73.7
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.3e-48 195.7 145 71.0
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 5.6e-48 194.9 189 60.8
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 5.6e-48 194.9 164 63.4
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.4e-46 190.3 152 73.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.4e-46 190.3 145 73.8
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.8e-46 189.9 164 61.6
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.4e-46 189.5 194 63.4
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 3.1e-46 189.1 192 62.5
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.9e-46 188.0 161 67.1
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.8e-45 184.9 159 67.9
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 7.6e-45 184.5 159 67.9
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.9e-44 181.8 193 58.0
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.1e-43 177.9 157 67.5
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 5.1e-41 171.8 97 93.8
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 8.1e-39 164.5 124 66.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.8e-38 163.3 187 54.5
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 5.3e-38 161.8 124 66.1
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.6e-37 159.5 158 56.3
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 4.5e-37 158.7 158 59.5
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.9e-36 155.2 168 56.5
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 6.5e-36 154.8 176 52.3
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.9e-35 153.3 144 63.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.2e-34 150.6 125 60.0
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 1.2e-34 150.6 173 53.2
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-34 150.2 126 70.6
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.7e-34 149.4 126 70.6
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.9e-33 145.6 177 48.6
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.7e-33 144.8 163 50.9
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 6.7e-33 144.8 78 94.9
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.2e-29 134.0 176 46.6
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.9e-29 131.7 144 57.6
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.0e-25 120.9 69 88.4
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.6e-23 113.6 68 85.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.7e-23 112.5 127 59.1
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.3e-23 111.7 68 83.8
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.4e-22 110.5 113 61.9
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.4e-22 109.8 114 60.5
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.0e-17 92.8 63 73.0
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 3.0e-17 92.8 63 76.2
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 5.1e-17 92.0 60 75.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 6.7e-17 91.7 63 74.6
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.0e-16 90.1 68 66.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 4.3e-16 89.0 47 89.4
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.7e-15 87.0 125 39.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 6.7e-09 65.1 38 81.6
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 5.7e-08 62.0 53 62.3
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 9.7e-08 61.2 53 62.3
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 6.3e-07 58.5 53 60.4
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 5.3e-06 55.5 31 87.1


User provided reference genes

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