Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 8.7e-125 450.7 289 100.0
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 1.6e-107 393.3 290 74.8
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.8e-107 392.5 290 74.5
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 6.2e-107 391.3 290 74.5
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 2.5e-103 379.4 315 68.9
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 3.9e-101 372.1 289 69.9
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 2.1e-99 366.3 289 69.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 5.8e-97 358.2 290 69.7
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 1.3e-96 357.1 290 69.3
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 1.7e-96 356.7 290 69.3
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 2.9e-96 355.9 289 66.1
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 3.8e-96 355.5 289 68.9
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 1.9e-95 353.2 290 66.2
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.2e-89 334.0 290 63.8
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 5.9e-89 331.6 260 68.8
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 3.8e-88 328.9 289 63.0
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 1.2e-73 280.8 287 56.1
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.3e-72 277.3 200 72.5
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 2.1e-70 270.0 276 56.2
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.4e-66 257.3 293 52.9
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 7.7e-65 251.5 288 50.0
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 7.7e-65 251.5 217 59.9
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 3.8e-64 249.2 243 56.4
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-63 246.9 237 55.7
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.5e-63 246.5 288 49.0
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 3.2e-63 246.1 243 54.7
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.2e-63 246.1 288 49.3
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 3.2e-63 246.1 291 49.8
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 3.2e-63 246.1 221 58.8
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.2e-63 245.7 243 54.7
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 5.5e-63 245.4 295 49.8
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 7.2e-63 245.0 299 51.2
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 9.4e-63 244.6 226 56.2
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 9.4e-63 244.6 254 54.3
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.2e-62 244.2 217 58.1
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 2.1e-62 243.4 227 57.3
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 2.7e-62 243.0 218 57.3
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.7e-62 243.0 291 49.8
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 3.6e-62 242.7 226 55.8
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 3.6e-62 242.7 229 55.0
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 3.6e-62 242.7 224 56.2
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 4.7e-62 242.3 296 49.0
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 6.1e-62 241.9 295 50.5
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.8e-61 240.4 218 56.9
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 2.3e-61 240.0 296 49.3
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 2.3e-61 240.0 302 47.7
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 4.0e-61 239.2 293 50.2
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 4.0e-61 239.2 284 49.3
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 6.8e-61 238.4 239 54.4
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.8e-61 238.4 217 57.1
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 6.8e-61 238.4 222 56.8
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.5e-60 237.3 207 59.9
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 5.7e-60 235.3 250 53.6
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 7.5e-60 235.0 295 50.2
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 7.5e-60 235.0 220 55.5
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 9.7e-60 234.6 209 58.4
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 9.7e-60 234.6 209 58.4
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 9.7e-60 234.6 294 48.6
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.3e-59 234.2 293 48.1
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 6.3e-59 231.9 205 59.5
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 2.4e-58 229.9 208 58.2
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 3.1e-58 229.6 204 57.4
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 5.3e-58 228.8 205 58.0
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 7.0e-58 228.4 205 56.1
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 1.6e-57 227.3 205 56.6
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 3.5e-57 226.1 214 55.1
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 5.9e-57 225.3 203 56.7
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.7e-56 223.8 205 56.1
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 2.2e-56 223.4 207 56.0
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.9e-56 223.0 206 54.9
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 3.8e-56 222.6 273 46.9
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 8.5e-56 221.5 209 55.0
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.1e-55 221.1 256 49.2
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 1.5e-55 220.7 203 54.7
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 1.5e-55 220.7 203 54.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-55 219.9 203 55.7
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 2.5e-55 219.9 201 56.7
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 3.2e-55 219.5 202 55.0
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 7.2e-55 218.4 203 54.7
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 9.4e-55 218.0 268 46.6
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.2e-54 217.6 208 53.4
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.2e-54 217.6 268 46.6
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.2e-54 217.6 271 45.8
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 2.1e-54 216.9 208 54.8
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 2.1e-54 216.9 210 54.8
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.7e-54 216.5 201 57.2
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 3.6e-54 216.1 262 47.7
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.6e-54 216.1 207 55.1
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 3.6e-54 216.1 203 54.2
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 3.6e-54 216.1 204 55.9
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.0e-53 214.5 257 47.9
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.8e-53 213.8 231 51.5
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 3.0e-53 213.0 215 54.9
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 6.8e-53 211.8 203 53.2
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.2e-52 211.1 254 47.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.6e-52 209.9 276 45.7
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 7.5e-52 208.4 209 52.6
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 3.7e-51 206.1 203 53.7
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 4.8e-51 205.7 203 51.2
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.4e-50 203.4 200 53.5
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 2.1e-46 190.3 204 49.0
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 2.8e-46 189.9 192 52.1
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.0e-45 188.0 200 50.0
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 5.2e-45 185.7 199 48.7
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 7.0e-42 175.3 219 42.9
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 1.2e-41 174.5 254 42.9
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 5.9e-41 172.2 226 47.3
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 3.9e-40 169.5 184 56.0
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.9e-40 169.5 262 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.6e-38 164.1 201 42.8
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 2.1e-38 163.7 201 45.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.2e-34 149.8 87 77.0
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.7e-33 146.7 265 37.4
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.1e-31 141.4 193 44.6
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 5.2e-29 132.5 208 37.5
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 1.1e-21 108.2 65 73.8
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 6.8e-21 105.5 107 43.9
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.6e-20 103.6 187 36.9
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.6e-20 103.6 187 36.9
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 5.8e-20 102.4 86 48.8
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.7e-19 99.8 134 44.8
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 4.1e-18 96.3 106 43.4
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 3.0e-16 90.1 100 41.0
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.4e-13 81.3 58 69.0
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.9e-10 70.9 37 78.4
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 7.8e-09 65.5 156 32.7
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.9e-07 60.8 43 67.4


User provided reference genes

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