Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25137 Brassica carinata HOM05D009193 ORTHO05D014963 1.4e-237 825.9 410 100.0
BcaC03g15751 Brassica carinata HOM05D009193 ORTHO05D014963 4.7e-108 395.6 515 50.7
BraA02t07150Z Brassica rapa HOM05D009193 ORTHO05D014963 8.3e-105 384.8 554 47.3
C02p34850 Brassica napus HOM05D009193 ORTHO05D014963 1.4e-104 384.0 553 47.0
BraA09t40667Z Brassica rapa HOM05D009193 ORTHO05D014963 1.4e-104 384.0 519 49.3
BolC2t09505H Brassica oleracea HOM05D009193 ORTHO05D014963 1.7e-102 377.1 549 46.4
A09p52370 Brassica napus HOM05D009193 ORTHO05D014963 3.8e-102 375.9 546 47.3
BcaB05g25049 Brassica carinata HOM05D009193 ORTHO05D014963 3.6e-92 342.8 514 45.9
BcaB05g25046 Brassica carinata HOM05D009193 ORTHO05D014963 7.5e-90 335.1 522 46.2
C08p35110 Brassica napus HOM05D009193 ORTHO05D014963 1.6e-55 221.1 320 47.8
C08p35100 Brassica napus HOM05D009193 ORTHO05D014963 1.3e-38 164.9 181 56.4
BolC3t19675H Brassica oleracea HOM05D009193 ORTHO05D027771 1.5e-29 134.8 491 30.3
BcaC01g01608 Brassica carinata HOM05D009193 ORTHO05D027771 4.8e-28 129.8 448 30.4
BolC2t09509H Brassica oleracea HOM05D009193 ORTHO05D027634 2.6e-26 124.0 214 42.5
BcaC03g15735 Brassica carinata HOM05D009193 ORTHO05D014963 2.2e-25 120.9 324 35.8
C03p74120 Brassica napus HOM05D009193 ORTHO05D027771 1.0e-17 95.5 319 31.0
Carub.0006s0564 Capsella rubella HOM05D002594 ORTHO05D003499 1.4e-11 75.1 229 36.2
AL6G21150 Arabidopsis lyrata HOM05D002594 ORTHO05D011495 1.8e-11 74.7 84 46.4
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 4.1e-11 73.6 85 58.8
BcaNung05664 Brassica carinata HOM05D002594 ORTHO05D003499 5.3e-11 73.2 92 54.3
BcaNung05662 Brassica carinata HOM05D002594 ORTHO05D003499 7.0e-11 72.8 89 55.1
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 9.1e-11 72.4 85 57.6
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 9.1e-11 72.4 85 57.6
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 1.2e-10 72.0 85 57.6
BcaC05g25380 Brassica carinata HOM05D002594 ORTHO05D003499 1.2e-10 72.0 85 57.6
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 1.6e-10 71.6 85 57.6
BcaC05g25382 Brassica carinata HOM05D002594 ORTHO05D003499 1.6e-10 71.6 86 57.0
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 2.6e-10 70.9 85 56.5
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 2.6e-10 70.9 85 56.5
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 2.6e-10 70.9 85 57.6
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 2.6e-10 70.9 85 56.5
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 3.5e-10 70.5 85 56.5
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 3.5e-10 70.5 85 56.5
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 3.5e-10 70.5 85 56.5
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 3.5e-10 70.5 85 55.3
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 4.5e-10 70.1 85 55.3
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 2.9e-09 67.4 86 55.8
Carub.0006s0760 Capsella rubella HOM05D002594 ORTHO05D019719 3.8e-09 67.0 247 29.1
Thhalv10015678m.g Eutrema salsugineum HOM05D009193 ORTHO05D014963 5.0e-09 66.6 57 49.1
Carub.0007s2621 Capsella rubella HOM05D002594 ORTHO05D012777 6.5e-09 66.2 82 58.5
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 3.2e-08 63.9 86 50.0
AL6G22980 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 3.2e-08 63.9 83 42.2
A10p30060 Brassica napus HOM05D002594 ORTHO05D011495 7.2e-08 62.8 81 50.6
AL6G16600 Arabidopsis lyrata HOM05D002594 ORTHO05D019719 9.4e-08 62.4 154 29.9
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 9.4e-08 62.4 85 51.8
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 1.2e-07 62.0 85 49.4
C09p70470 Brassica napus HOM05D002594 ORTHO05D003499 1.2e-07 62.0 82 53.7
AL5G28780 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 1.6e-07 61.6 170 29.4
BcaC03g18476 Brassica carinata HOM05D009193 ORTHO05D014392 1.6e-07 61.6 144 28.5
C03p73940 Brassica napus HOM05D009193 ORTHO05D003499 1.6e-07 61.6 64 45.3
AT5G06890 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 2.1e-07 61.2 72 55.6
BraA10t45046Z Brassica rapa HOM05D002594 ORTHO05D011495 2.7e-07 60.8 82 48.8
Thhalv10016290m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 3.6e-07 60.5 81 51.9
AL636U10010 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 6.1e-07 59.7 81 44.4
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 6.1e-07 59.7 90 50.0
AL7G39900 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 8.0e-07 59.3 167 34.7
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 1.8e-06 58.2 89 50.6
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 1.8e-06 58.2 89 48.3
Lj5g0011873 Lotus japonicus HOM05D002594 ORTHO05D003499 2.3e-06 57.8 89 49.4
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 2.3e-06 57.8 65 43.1
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 2.3e-06 57.8 89 48.3
BcaNung06484 Brassica carinata HOM05D011209 ORTHO05D011495 3.0e-06 57.4 178 31.5
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 3.0e-06 57.4 89 49.4
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 4.0e-06 57.0 89 50.6
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 4.0e-06 57.0 89 49.4
AL3G36590 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 5.2e-06 56.6 61 45.9
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 5.2e-06 56.6 89 47.2
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 5.2e-06 56.6 89 49.4
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 5.2e-06 56.6 89 48.3
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 6.7e-06 56.2 91 48.4
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 6.7e-06 56.2 89 50.6
Medtr7g063860 Medicago truncatula HOM05D002594 ORTHO05D003499 6.7e-06 56.2 90 47.8
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 6.7e-06 56.2 89 47.2
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 8.8e-06 55.8 89 48.3


User provided reference genes

Program Settings