Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 2.9e-85 318.5 162 100.0
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 2.2e-40 169.5 118 74.6
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 2.8e-40 169.1 118 74.6
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 2.6e-38 162.5 118 73.7
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.3e-37 160.2 118 73.7
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 1.4e-36 156.8 118 69.5
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 1.9e-36 156.4 118 69.5
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 1.9e-36 156.4 117 71.8
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 2.5e-36 156.0 118 71.2
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 7.2e-36 154.5 118 68.6
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 6.1e-35 151.4 118 66.9
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 7.4e-33 144.4 121 65.3
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 9.1e-31 137.5 121 62.0
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 4.4e-25 118.6 127 54.3
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 5.7e-25 118.2 119 49.6
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 7.5e-25 117.9 94 58.5
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.3e-24 117.1 110 55.5
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 1.3e-24 117.1 119 49.6
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.7e-24 116.7 111 53.2
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.7e-24 116.7 110 53.6
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 2.2e-24 116.3 87 62.1
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 2.2e-24 116.3 124 54.0
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 3.7e-24 115.5 124 51.6
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 3.7e-24 115.5 115 51.3
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 4.8e-24 115.2 104 53.8
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.1e-23 114.0 87 59.8
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.4e-23 112.8 120 48.3
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 4.1e-23 112.1 108 51.9
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 4.1e-23 112.1 109 48.6
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 2.7e-22 109.4 118 51.7
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 3.5e-22 109.0 120 53.3
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 5.9e-22 108.2 118 48.3
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 7.7e-22 107.8 113 51.3
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.0e-21 107.5 119 48.7
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.0e-21 107.5 88 54.5
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.0e-21 107.5 115 49.6
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 1.3e-21 107.1 150 45.3
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 1.7e-21 106.7 129 48.8
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 2.2e-21 106.3 125 52.8
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 6.5e-21 104.8 151 41.1
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.1e-20 104.0 108 46.3
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.5e-20 103.6 96 52.1
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 1.5e-20 103.6 96 53.1
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.9e-20 103.2 108 50.9
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 1.9e-20 103.2 121 48.8
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 2.5e-20 102.8 90 52.2
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 3.2e-20 102.4 118 46.6
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 3.2e-20 102.4 124 46.8
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 3.2e-20 102.4 111 44.1
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 4.2e-20 102.1 91 54.9
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 4.2e-20 102.1 121 47.9
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 4.2e-20 102.1 119 43.7
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 5.5e-20 101.7 122 47.5
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 7.2e-20 101.3 121 43.8
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.2e-19 100.5 119 42.9
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.6e-19 100.1 87 50.6
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 2.1e-19 99.8 119 42.9
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.1e-19 99.8 119 42.9
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 3.6e-19 99.0 119 47.9
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 4.7e-19 98.6 118 50.0
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 4.7e-19 98.6 121 47.1
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 8.0e-19 97.8 123 47.2
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 1.0e-18 97.4 84 57.1
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 1.0e-18 97.4 114 45.6
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.4e-18 97.1 117 44.4
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 2.3e-18 96.3 129 43.4
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 3.0e-18 95.9 129 45.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 6.8e-18 94.7 87 50.6
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 1.2e-17 94.0 119 45.4
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.5e-17 93.6 105 47.6
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 7.5e-17 91.3 114 45.6
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 1.3e-16 90.5 91 48.4
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.3e-16 90.5 133 44.4
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 1.7e-16 90.1 91 48.4
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 1.7e-16 90.1 119 40.3
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 1.7e-16 90.1 89 52.8
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 2.8e-16 89.4 99 52.5
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 2.8e-16 89.4 101 46.5
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 2.8e-16 89.4 108 43.5
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 4.8e-16 88.6 115 42.6
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 1.1e-15 87.4 118 39.8
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.1e-15 87.4 100 41.0
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.4e-15 87.0 87 44.8
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 4.1e-15 85.5 118 39.0
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 2.0e-14 83.2 118 41.5
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 2.7e-14 82.8 119 43.7
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 5.9e-14 81.6 128 41.4
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 1.3e-13 80.5 116 38.8
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 2.2e-13 79.7 146 38.4
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 3.8e-13 79.0 70 48.6
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 8.5e-13 77.8 119 42.0
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 8.0e-11 71.2 73 45.2
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 4.0e-10 68.9 137 38.0
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 2.4e-07 59.7 124 33.1
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 4.1e-07 58.9 92 35.9


User provided reference genes

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