Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 0.0e+00 1151.3 592 100.0
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 0.0e+00 1106.7 593 96.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 0.0e+00 1102.8 593 96.3
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 0.0e+00 1102.8 593 96.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 0.0e+00 1088.9 594 95.3
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 0.0e+00 1083.9 594 94.9
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 2.3e-310 1068.1 592 92.1
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.1e-295 1018.5 586 89.4
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 8.1e-295 1016.5 589 88.8
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.6e-293 1011.5 588 88.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 8.4e-292 1006.5 586 88.1
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 3.9e-289 997.7 588 86.7
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 4.6e-282 974.2 574 86.2
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.6e-269 931.8 576 83.7
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.1e-267 926.4 516 91.1
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.7e-250 868.6 588 77.0
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 9.5e-211 737.3 589 64.3
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.2e-208 730.3 560 67.9
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.2e-208 730.3 594 64.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.4e-207 724.5 587 63.4
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.7e-205 719.2 588 63.3
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 4.4e-200 701.8 589 62.1
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 5.4e-198 694.9 596 61.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 7.0e-198 694.5 593 62.1
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 3.0e-196 689.1 589 61.5
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.5e-195 686.8 586 60.4
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 4.3e-195 685.3 593 61.0
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 4.9e-191 671.8 600 59.8
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.1e-190 670.6 599 60.1
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.4e-190 670.2 602 60.5
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.9e-190 669.8 589 59.9
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 3.2e-190 669.1 589 60.1
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 7.1e-190 667.9 611 59.6
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.2e-190 667.5 593 60.4
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.1e-189 666.4 589 59.6
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 6.0e-189 664.8 598 59.2
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 7.8e-189 664.5 598 59.9
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.3e-188 662.9 584 60.1
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.8e-186 656.0 612 58.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 6.8e-185 651.4 593 58.9
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 5.8e-184 648.3 598 58.7
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.7e-183 646.7 584 59.4
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.2e-182 642.5 601 58.6
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.7e-181 639.4 593 58.5
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.1e-179 634.0 566 59.7
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.9e-179 633.3 591 58.7
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 2.5e-179 632.9 595 58.3
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 2.5e-179 632.9 595 58.7
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 4.3e-179 632.1 591 57.9
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.2e-178 630.6 596 57.2
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.1e-178 629.8 716 51.1
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.8e-178 629.4 597 58.3
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.1e-177 627.5 555 60.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.4e-177 627.1 560 63.2
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 4.0e-177 625.5 592 56.6
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 4.0e-177 625.5 585 57.3
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 9.0e-177 624.4 591 57.2
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.5e-176 623.6 599 57.1
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 2.0e-176 623.2 624 55.8
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 2.0e-176 623.2 590 56.4
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 2.6e-176 622.9 608 56.4
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.4e-176 622.5 599 56.9
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.3e-175 620.5 586 56.7
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.9e-175 618.6 732 49.7
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 7.1e-174 614.8 543 60.2
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.6e-173 613.6 584 56.7
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.1e-173 613.2 615 54.3
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.6e-173 612.1 586 58.2
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.3e-172 609.8 586 56.5
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.0e-172 609.4 586 56.5
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 6.6e-172 608.2 656 52.4
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 8.7e-172 607.8 587 56.0
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.9e-171 606.7 590 55.4
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 7.3e-171 604.7 588 56.1
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 4.8e-170 602.1 595 55.6
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 4.8e-170 602.1 603 56.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 2.4e-169 599.7 591 54.3
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 3.1e-169 599.4 528 60.4
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 4.0e-169 599.0 595 56.1
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.2e-168 597.4 543 64.1
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.5e-168 597.0 586 56.1
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.5e-168 597.0 586 54.8
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 9.3e-166 587.8 595 55.5
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.6e-165 587.0 699 49.1
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.5e-165 585.9 599 53.3
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 6.0e-165 585.1 691 50.5
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 6.7e-164 581.6 587 54.9
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.1e-162 576.6 605 54.2
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.1e-161 574.3 608 52.5
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 4.5e-160 568.9 597 51.4
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 4.9e-159 565.5 608 53.5
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 5.5e-158 562.0 586 53.9
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.1e-157 560.1 601 52.9
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 8.7e-156 554.7 368 79.1
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.7e-156 554.7 529 56.9
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 3.7e-154 549.3 606 52.5
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 8.2e-154 548.1 593 50.8
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.4e-153 547.4 586 52.4
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 3.1e-153 546.2 588 53.4
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 9.0e-153 544.7 586 54.1
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.7e-149 533.1 469 61.8
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 6.7e-148 528.5 604 50.8
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 6.3e-146 521.9 658 48.2
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.4e-145 520.8 427 63.5
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.8e-145 520.4 590 51.0
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.9e-143 513.1 484 61.4
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 2.5e-142 510.0 475 58.1
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.6e-133 480.7 583 47.7
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.1e-133 480.3 586 49.3
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.1e-133 478.8 474 53.8
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 2.6e-131 473.4 609 45.8
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.0e-127 459.1 354 65.5
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 7.2e-126 455.3 588 42.2
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 8.8e-124 448.4 398 59.3
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 5.3e-121 439.1 438 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.2e-120 438.0 595 44.0
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.6e-120 437.6 397 60.5
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 2.3e-116 423.7 465 49.9
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 2.0e-115 420.6 388 57.5
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.5e-112 409.5 360 60.6
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 9.4e-110 401.7 456 51.3
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.7e-109 400.2 312 68.9
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.7e-106 391.0 356 60.4
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.1e-97 361.7 351 57.0
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 3.2e-97 360.1 460 46.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 2.3e-95 354.0 419 49.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 8.0e-93 345.5 597 38.0
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-81 308.1 472 42.6
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 3.9e-79 300.1 227 68.3
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.5e-78 297.4 440 43.0
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.4e-66 256.1 214 60.3
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.4e-66 255.8 293 50.2
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 7.8e-64 249.2 207 64.7
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.9e-63 246.9 376 41.2
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 4.3e-62 243.4 194 64.4
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 3.8e-58 230.3 289 45.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.4e-57 228.4 184 60.3
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.2e-57 227.3 204 55.9
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 1.9e-54 218.0 498 37.6
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.8e-52 211.5 161 64.6
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-52 209.5 231 45.9
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.2e-50 204.5 355 41.1
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 4.9e-50 203.4 198 54.5
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.3e-46 190.7 203 49.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-42 178.7 271 43.5
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 9.3e-41 172.6 183 53.0
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 6.0e-40 169.9 183 52.5
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.0e-39 169.1 163 53.4
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 8.7e-39 166.0 119 68.9
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.9e-38 164.9 234 43.6
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.5e-35 155.2 231 42.0
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.6e-32 143.7 189 47.1
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.0e-23 115.9 134 47.0
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.8e-23 115.2 129 43.4
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.4e-20 105.5 201 38.3
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 3.1e-20 104.4 167 39.5
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 9.1e-20 102.8 80 62.5
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 3.4e-19 100.9 560 23.2
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 4.5e-19 100.5 628 23.1
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 7.7e-19 99.8 171 38.6
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.9e-18 97.8 77 63.6
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 3.8e-18 97.4 131 44.3
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 5.0e-18 97.1 94 53.2
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 8.5e-18 96.3 73 64.4
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.5e-18 96.3 65 69.2
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.4e-17 95.5 156 36.5
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.9e-17 95.1 78 60.3
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 7.2e-17 93.2 81 56.8
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 1.6e-16 92.0 108 48.1
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 2.6e-14 84.7 67 71.6
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 1.3e-13 82.4 61 75.4
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.7e-13 80.9 67 61.2
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.4e-12 78.2 202 32.7
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.8e-10 70.9 58 63.8
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.5e-09 68.9 53 64.2
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.5e-09 68.9 75 48.0
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 2.5e-09 68.2 56 58.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 7.2e-09 66.6 41 80.5
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.4e-07 62.4 216 27.3
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 5.2e-07 60.5 45 64.4
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 8.8e-07 59.7 62 51.6
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 2.0e-06 58.5 69 43.5
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.0e-06 58.5 45 64.4
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 3.3e-06 57.8 125 37.6
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 4.4e-06 57.4 116 39.7


User provided reference genes

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