Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24432 Brassica carinata HOM05D002721 ORTHO05D002919 1.6e-106 389.4 200 100.0
Sp5g24050 Schrenkiella parvula HOM05D002721 ORTHO05D002919 8.0e-45 184.5 145 68.3
Thhalv10018242m.g Eutrema salsugineum HOM05D002721 ORTHO05D002919 8.9e-44 181.0 150 65.3
A02p15490 Brassica napus HOM05D002721 ORTHO05D002919 8.3e-42 174.5 159 63.5
C02p25600 Brassica napus HOM05D002721 ORTHO05D002919 8.3e-42 174.5 151 64.9
BcaB05g24431 Brassica carinata HOM05D002721 ORTHO05D002919 1.8e-41 173.3 173 59.0
BolC2t08623H Brassica oleracea HOM05D002721 ORTHO05D002919 1.8e-41 173.3 159 62.3
BraA02t06610Z Brassica rapa HOM05D002721 ORTHO05D002919 7.0e-41 171.4 152 63.8
C06p40920 Brassica napus HOM05D002721 ORTHO05D002919 4.5e-40 168.7 150 64.0
BolC6t39341H Brassica oleracea HOM05D002721 ORTHO05D002919 4.5e-40 168.7 150 64.0
BcaC08g46345 Brassica carinata HOM05D002721 ORTHO05D002919 5.9e-40 168.3 145 64.8
AT1G68910 Arabidopsis thaliana HOM05D002721 ORTHO05D002919 2.9e-39 166.0 156 60.3
A07p35320 Brassica napus HOM05D002721 ORTHO05D002919 3.8e-39 165.6 150 63.3
CARHR061780 Cardamine hirsuta HOM05D002721 ORTHO05D002919 5.0e-39 165.2 148 60.8
BcaB03g15864 Brassica carinata HOM05D002721 ORTHO05D002919 8.6e-39 164.5 157 62.4
Carub.0002s1555 Capsella rubella HOM05D002721 ORTHO05D002919 8.6e-39 164.5 156 59.6
BraA07t31125Z Brassica rapa HOM05D002721 ORTHO05D002919 1.1e-38 164.1 150 62.7
AL2G27940 Arabidopsis lyrata HOM05D002721 ORTHO05D002919 4.3e-38 162.2 156 59.0
Aa31sc12G170 Aethionema arabicum HOM05D002721 ORTHO05D002919 3.0e-36 156.0 177 53.7
SpUn0004_0110 Schrenkiella parvula HOM05D006786 ORTHO05D008901 7.5e-27 124.8 153 50.3
BcaC08g46344 Brassica carinata HOM05D002721 ORTHO05D002919 2.6e-19 99.8 105 59.0
Thecc.02G319900 Theobroma cacao HOM05D002721 ORTHO05D002919 2.2e-18 96.7 136 42.6
arahy.Tifrunner.gnm1.ann1.EIW9IC Arachis hypogaea HOM05D002721 ORTHO05D002919 2.9e-18 96.3 156 35.9
Lj6A772G33 Lonicera japonica HOM05D002721 ORTHO05D002919 3.7e-18 95.9 142 38.7
Cpa.g.sc570.3 Carica papaya HOM05D002721 ORTHO05D002919 8.3e-18 94.7 162 35.8
arahy.Tifrunner.gnm1.ann1.B0WRJ9 Arachis hypogaea HOM05D002721 ORTHO05D002919 1.9e-17 93.6 156 35.9
CSS0049515 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 2.4e-17 93.2 143 37.8
Cpa.g.sc1414.3 Carica papaya HOM05D002721 ORTHO05D002919 2.4e-17 93.2 162 35.8
ClCG01G007340 Citrullus lanatus HOM05D002721 ORTHO05D002919 2.4e-17 93.2 157 35.0
Dinv33997 Davidia involucrata HOM05D002721 ORTHO05D002919 3.2e-17 92.8 144 37.5
Eucgr.G02406 Eucalyptus grandis HOM05D002721 ORTHO05D002919 3.2e-17 92.8 159 35.8
MD16G1053400 Malus domestica HOM05D002721 ORTHO05D002919 5.4e-17 92.0 139 36.7
QL03p073121 Quercus lobata HOM05D002721 ORTHO05D002919 3.5e-16 89.4 145 35.9
TAR371G1157 Trochodendron aralioides HOM05D002721 ORTHO05D002919 6.0e-16 88.6 130 41.5
Duzib248G1050 Durio zibethinus HOM05D002721 ORTHO05D002919 7.8e-16 88.2 136 38.2
Duzib251G0850 Durio zibethinus HOM05D002721 ORTHO05D002919 7.8e-16 88.2 156 38.5
COL.COLO4_27771 Corchorus olitorius HOM05D002721 ORTHO05D002919 1.7e-15 87.0 138 37.7
Gohir.D13G086700 Gossypium hirsutum HOM05D002721 ORTHO05D002919 1.7e-15 87.0 136 39.0
GSVIVG01010127001 Vitis vinifera HOM05D002721 ORTHO05D002919 1.7e-15 87.0 140 38.6
Sabra10G0104500 Salix brachista HOM05D002721 ORTHO05D002919 2.3e-15 86.7 145 37.2
Gorai.013G098800 Gossypium raimondii HOM05D002721 ORTHO05D002919 3.0e-15 86.3 136 39.0
MD13G1054600 Malus domestica HOM05D002721 ORTHO05D002919 3.0e-15 86.3 139 34.5
Potri.010G135900 Populus trichocarpa HOM05D002721 ORTHO05D002919 3.9e-15 85.9 145 37.9
Rhsim09G0119600 Rhododendron simsii HOM05D002721 ORTHO05D002919 3.9e-15 85.9 133 37.6
Thecc.04G110800 Theobroma cacao HOM05D002721 ORTHO05D002919 3.9e-15 85.9 142 36.6
Gohir.A12G056901 Gossypium hirsutum HOM05D002721 ORTHO05D002919 5.1e-15 85.5 138 34.1
QL02p063553 Quercus lobata HOM05D002721 ORTHO05D002919 5.1e-15 85.5 162 35.2
Actinidia13414 Actinidia chinensis HOM05D002721 ORTHO05D002919 6.6e-15 85.1 133 36.1
Gorai.008G059400 Gossypium raimondii HOM05D002721 ORTHO05D002919 6.6e-15 85.1 138 34.1
Sed0004629 Sechium edule HOM05D002721 ORTHO05D002919 6.6e-15 85.1 156 34.6
MELO3C005176.2 Cucumis melo HOM05D002721 ORTHO05D002919 8.6e-15 84.7 158 33.5
CsaV3_5G018810 Cucumis sativus L. HOM05D002721 ORTHO05D002919 8.6e-15 84.7 157 35.0
Prupe.1G297300 Prunus persica HOM05D002721 ORTHO05D002919 1.1e-14 84.3 156 33.3
Hma1.2p1_1348F.1_g277310 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 1.5e-14 84.0 148 36.5
Lj2g0020384 Lotus japonicus HOM05D002721 ORTHO05D002919 1.9e-14 83.6 139 34.5
Glyma.01G068800 Glycine max HOM05D002721 ORTHO05D002919 2.5e-14 83.2 147 34.0
Glyma.02G125400 Glycine max HOM05D002721 ORTHO05D002919 2.5e-14 83.2 147 34.7
Prupe.3G246700 Prunus persica HOM05D002721 ORTHO05D002919 4.3e-14 82.4 164 31.1
vmacro10459 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 7.3e-14 81.6 137 37.2
Dinv15572 Davidia involucrata HOM05D002721 ORTHO05D002919 9.5e-14 81.3 130 39.2
Aqoxy3G03780 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 1.6e-13 80.5 162 36.4
ECA234G4745 Erigeron canadensis HOM05D002721 ORTHO05D002919 1.6e-13 80.5 127 37.8
Lalb_Chr10g0099321 Lupinus albus HOM05D002721 ORTHO05D002919 3.6e-13 79.3 148 33.8
VMungo1215G0663 Vigna mungo HOM05D002721 ORTHO05D002919 3.6e-13 79.3 150 30.7
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 4.7e-13 79.0 136 34.6
Lj2g0017371 Lotus japonicus HOM05D002721 ORTHO05D002919 4.7e-13 79.0 139 34.5
Sc10g0000490 Simmondsia chinensis HOM05D002721 ORTHO05D002919 6.2e-13 78.6 137 32.1
CANSAT64G0632 Cannabis sativa HOM05D002721 ORTHO05D002919 8.1e-13 78.2 148 34.5
DCAR_026695 Daucus carota HOM05D002721 ORTHO05D002919 8.1e-13 78.2 134 34.3
MD17G1067700 Malus domestica HOM05D002721 ORTHO05D002919 1.1e-12 77.8 168 31.5
PGR119G2480 Punica granatum HOM05D002721 ORTHO05D002919 1.1e-12 77.8 138 35.5
Duzib211G0355 Durio zibethinus HOM05D002721 ORTHO05D002919 1.4e-12 77.4 138 33.3
Phvul.002G083200 Phaseolus vulgaris HOM05D002721 ORTHO05D002919 1.4e-12 77.4 147 32.0
Atru.chr8.683 Acer truncatum HOM05D002721 ORTHO05D002919 1.8e-12 77.0 138 32.6
Cpa.g.c34209.1 Carica papaya HOM05D002721 ORTHO05D002919 1.8e-12 77.0 138 33.3
MBI15_g42002_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 1.8e-12 77.0 132 37.9
Aqoxy3G00575 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 2.4e-12 76.6 145 31.7
Hund16254 Selenicereus undatus HOM05D002721 ORTHO05D002919 2.4e-12 76.6 140 30.7
Ca_05183_v3 Cicer arietinum L. HOM05D002721 ORTHO05D002919 4.0e-12 75.9 145 31.7
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 4.0e-12 75.9 136 35.3
Dinv34891 Davidia involucrata HOM05D002721 ORTHO05D002919 5.2e-12 75.5 137 31.4
RcHm_v2.0_Chr4g0437011 Rosa chinensis HOM05D002721 ORTHO05D002919 5.2e-12 75.5 138 31.2
TPR.G2672 Trifolium pratense HOM05D002721 ORTHO05D002919 5.2e-12 75.5 164 31.7
CiPaw.03G080900 Carya illinoinensis HOM05D002721 ORTHO05D002919 6.8e-12 75.1 186 29.6
Potri.017G106400 Populus trichocarpa HOM05D002721 ORTHO05D002919 8.9e-12 74.7 136 31.6
vmacro18116 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 1.5e-11 73.9 150 30.0
CANSAT64G2265 Cannabis sativa HOM05D002721 ORTHO05D002919 2.0e-11 73.6 138 32.6
Migut.H00573 Erythranthe guttata HOM05D002721 ORTHO05D002919 2.0e-11 73.6 137 32.1
Hma1.2p1_0588F.1_g184620 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 2.0e-11 73.6 139 33.8
Oeu007095.1 Olea europaea HOM05D002721 ORTHO05D002919 2.6e-11 73.2 138 34.8
RcHm_v2.0_Chr6g0275231 Rosa chinensis HOM05D002721 ORTHO05D002919 2.6e-11 73.2 147 29.3
TAR629G3028 Trochodendron aralioides HOM05D002721 ORTHO05D002919 2.6e-11 73.2 114 40.4
FvH4_4g28890 Fragaria vesca HOM05D002721 ORTHO05D002919 5.8e-11 72.0 138 31.9
FAN12G1937 Fragaria x ananassa HOM05D002721 ORTHO05D002919 5.8e-11 72.0 138 31.9
FAN22G0742 Fragaria x ananassa HOM05D002721 ORTHO05D002919 7.6e-11 71.6 138 31.9
MBI14_g08213_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 7.6e-11 71.6 132 36.4
Manes.01G105100 Manihot esculenta HOM05D002721 ORTHO05D002919 7.6e-11 71.6 137 28.5
CSS0034394 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 9.9e-11 71.2 138 33.3
Rhsim08G0078700 Rhododendron simsii HOM05D002721 ORTHO05D002919 9.9e-11 71.2 139 30.2
GSVIVG01036512001 Vitis vinifera HOM05D002721 ORTHO05D002919 9.9e-11 71.2 130 33.8
FAN07G0888 Fragaria x ananassa HOM05D002721 ORTHO05D002919 1.7e-10 70.5 138 31.2
Ah.10g038340 Amaranthus hybridus HOM05D002721 ORTHO05D002919 2.9e-10 69.7 136 27.2
Cfa008829 Carpinus fangiana HOM05D002721 ORTHO05D002919 2.9e-10 69.7 101 37.6
Haze_11843 Corylus avellana HOM05D002721 ORTHO05D002919 2.9e-10 69.7 103 38.8
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.9e-10 69.7 130 32.3
CDE02G0380 Ceratophyllum demersum HOM05D002721 ORTHO05D002919 3.8e-10 69.3 136 32.4
FAN17G0692 Fragaria x ananassa HOM05D002721 ORTHO05D002919 3.8e-10 69.3 138 31.9
Lalb_Chr17g0336741 Lupinus albus HOM05D002721 ORTHO05D002919 3.8e-10 69.3 142 30.3
SGA_v2.0_scaffold4G02351 Striga asiatica HOM05D002721 ORTHO05D002919 3.8e-10 69.3 154 32.5
TWI75G0211 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 3.8e-10 69.3 109 35.8
CAN.G182.5 Capsicum annuum HOM05D002721 ORTHO05D002919 4.9e-10 68.9 138 31.9
Cc07_g04670 Coffea canephora HOM05D002721 ORTHO05D002919 4.9e-10 68.9 126 36.5
unitig_52.g17630 Utricularia gibba HOM05D002721 ORTHO05D002919 8.4e-10 68.2 141 29.1
Sabra17G0089400 Salix brachista HOM05D002721 ORTHO05D002919 1.1e-09 67.8 132 30.3
Dinv33882 Davidia involucrata HOM05D002721 ORTHO05D002919 1.4e-09 67.4 135 31.1
Manes.02G061500 Manihot esculenta HOM05D002721 ORTHO05D002919 1.4e-09 67.4 168 27.4
TPR.G15931 Trifolium pratense HOM05D002721 ORTHO05D002919 2.4e-09 66.6 160 29.4
CAN.G93.45 Capsicum annuum HOM05D002721 ORTHO05D002919 3.2e-09 66.2 147 29.3
Glyma.13G050900 Glycine max HOM05D002721 ORTHO05D002919 3.2e-09 66.2 136 29.4
PGSC0003DMG400019651 Solanum tuberosum HOM05D002721 ORTHO05D002919 3.2e-09 66.2 147 32.0
MD09G1077300 Malus domestica HOM05D002721 ORTHO05D002919 5.4e-09 65.5 165 27.3
Nitab4.5_0006377g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 5.4e-09 65.5 147 30.6
Sopen05g006410 Solanum pennellii HOM05D002721 ORTHO05D002919 5.4e-09 65.5 147 31.3
EL10Ac4g08045 Beta vulgaris HOM05D002721 ORTHO05D002919 9.2e-09 64.7 142 25.4
Cc11_g11350 Coffea canephora HOM05D002721 ORTHO05D002919 9.2e-09 64.7 128 31.2
Nitab4.5_0000259g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 9.2e-09 64.7 147 29.9
PSO063G3792 Papaver somniferum HOM05D002721 ORTHO05D002919 9.2e-09 64.7 150 32.0
Sabra04G0073100 Salix brachista HOM05D002721 ORTHO05D002919 9.2e-09 64.7 128 29.7
Peaxi162Scf00188g00812 Petunia axillaris HOM05D002721 ORTHO05D002919 1.6e-08 63.9 160 28.1
PGR042G0929 Punica granatum HOM05D002721 ORTHO05D002919 1.6e-08 63.9 131 32.1
TWI32G1231 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 1.6e-08 63.9 131 27.5
Oeu024143.1 Olea europaea HOM05D002721 ORTHO05D002919 2.1e-08 63.5 144 32.6
PSO782G5409 Papaver somniferum HOM05D002721 ORTHO05D002919 2.1e-08 63.5 131 31.3
RcHm_v2.0_Chr2g0164391 Rosa chinensis HOM05D002721 ORTHO05D002919 2.1e-08 63.5 138 30.4
TWI34G0100 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 2.7e-08 63.2 131 27.5
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 3.5e-08 62.8 142 26.1
Nitab4.5_0003203g0020 Nicotiana tabacum HOM05D002721 ORTHO05D002919 4.6e-08 62.4 119 31.1
Solyc05g010590.4 Solanum lycopersicum HOM05D002721 ORTHO05D002919 6.0e-08 62.0 147 30.6
Cfa007718 Carpinus fangiana HOM05D002721 ORTHO05D002919 1.0e-07 61.2 91 33.0
Haze_14356 Corylus avellana HOM05D002721 ORTHO05D002919 1.0e-07 61.2 91 33.0
Migut.L01147 Erythranthe guttata HOM05D002721 ORTHO05D002919 1.0e-07 61.2 138 33.3
Oeu054586.2 Olea europaea HOM05D002721 ORTHO05D002919 1.0e-07 61.2 136 30.9
PGSC0003DMG400026559 Solanum tuberosum HOM05D002721 ORTHO05D002919 1.0e-07 61.2 119 31.1
THA.LOC104805537 Tarenaya hassleriana HOM05D002721 ORTHO05D002919 1.3e-07 60.8 104 34.6
FvH4_6g46070 Fragaria vesca HOM05D002721 ORTHO05D002919 1.7e-07 60.5 136 30.9
FAN14G2371 Fragaria x ananassa HOM05D000717 ORTHO05D000555 1.7e-07 60.5 136 30.9
Peaxi162Scf00019g00315 Petunia axillaris HOM05D002721 ORTHO05D002919 1.7e-07 60.5 147 27.2
Nitab4.5_0002249g0070 Nicotiana tabacum HOM05D002721 ORTHO05D002919 3.0e-07 59.7 119 31.1
arahy.Tifrunner.gnm1.ann1.8P3ZQ3 Arachis hypogaea HOM05D002721 ORTHO05D002919 8.7e-07 58.2 140 28.6
Lalb_Chr21g0318111 Lupinus albus HOM05D002721 ORTHO05D002919 8.7e-07 58.2 139 27.3
MSTRG.2964 Avicennia marina HOM05D002721 ORTHO05D002919 1.5e-06 57.4 99 31.3
AUR62009452 Chenopodium quinoa HOM05D002721 ORTHO05D002919 1.5e-06 57.4 97 29.9
Glyma.19G037700 Glycine max HOM05D002721 ORTHO05D002919 1.5e-06 57.4 136 27.2
DCAR_031197 Daucus carota HOM05D002721 ORTHO05D002919 1.9e-06 57.0 85 36.5
Phvul.008G024000 Phaseolus vulgaris HOM05D002721 ORTHO05D002919 1.9e-06 57.0 147 28.6
arahy.Tifrunner.gnm1.ann1.AT6RDF Arachis hypogaea HOM05D002721 ORTHO05D002919 2.5e-06 56.6 138 26.8
Oeu033419.1 Olea europaea HOM05D002721 ORTHO05D002919 3.3e-06 56.2 137 29.9
MSTRG.18044 Avicennia marina HOM05D002721 ORTHO05D002919 4.3e-06 55.8 136 31.6
MSTRG.789 Avicennia marina HOM05D002721 ORTHO05D002919 4.3e-06 55.8 136 31.6
FAN05G4529 Fragaria x ananassa HOM05D002721 ORTHO05D002919 5.6e-06 55.5 136 30.1
CiPaw.04G050900 Carya illinoinensis HOM05D002721 ORTHO05D002919 7.3e-06 55.1 116 31.9
Glyma.18G276900 Glycine max HOM05D002721 ORTHO05D002919 7.3e-06 55.1 146 28.8
Sopen02g015870 Solanum pennellii HOM05D002721 ORTHO05D002919 7.3e-06 55.1 119 28.6
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 9.6e-06 54.7 161 28.0
DCAR_019804 Daucus carota HOM05D002721 ORTHO05D002919 9.6e-06 54.7 88 33.0


User provided reference genes

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