Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24179 Brassica carinata HOM05D003531 ORTHO05D004354 3.3e-115 418.3 198 100.0
BcaB01g02046 Brassica carinata HOM05D003531 ORTHO05D015800 4.0e-73 278.5 141 93.6
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 5.3e-73 278.1 178 79.2
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 5.3e-73 278.1 178 79.2
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 9.9e-72 273.9 173 79.8
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 1.9e-70 269.6 173 77.5
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 3.5e-69 265.4 192 72.9
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 2.1e-66 256.1 186 71.0
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 4.5e-64 248.4 171 73.1
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 1.9e-59 233.0 183 62.3
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 4.3e-59 231.9 180 67.2
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 2.1e-58 229.6 183 61.7
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 3.4e-56 222.2 183 61.7
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 5.9e-56 221.5 186 62.4
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.5e-53 212.2 198 56.6
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 3.0e-52 209.1 184 59.2
BcaC06g33023 Brassica carinata HOM05D003531 ORTHO05D004354 5.5e-46 188.3 173 57.8
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 1.1e-43 180.6 172 57.6
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 1.5e-40 170.2 171 55.0
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 9.4e-38 161.0 187 49.2
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 2.7e-37 159.5 231 42.4
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 8.8e-36 154.5 189 45.5
BcaC09g49888 Brassica carinata HOM05D003531 ORTHO05D015800 1.1e-35 154.1 75 92.0
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 1.5e-35 153.7 99 74.7
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 4.4e-35 152.1 179 44.7
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 5.7e-35 151.8 101 71.3
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 9.7e-35 151.0 193 42.5
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 9.7e-35 151.0 179 44.7
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 9.7e-35 151.0 179 44.7
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 1.3e-34 150.6 192 43.8
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 1.4e-33 147.1 187 43.9
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 4.1e-33 145.6 184 42.9
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 2.0e-32 143.3 193 44.6
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 7.7e-32 141.4 191 41.4
BcaB03g16122 Brassica carinata HOM05D003531 ORTHO05D004354 2.9e-31 139.4 83 84.3
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 3.8e-31 139.0 188 41.5
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 3.8e-31 139.0 200 40.0
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 5.0e-31 138.7 182 42.3
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 1.1e-30 137.5 190 42.1
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 1.5e-30 137.1 196 40.8
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.9e-30 136.7 100 68.0
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 1.9e-30 136.7 195 40.5
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 2.5e-30 136.3 194 41.2
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 3.2e-30 136.0 192 40.1
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 5.5e-30 135.2 182 42.9
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 9.4e-30 134.4 183 42.1
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 9.4e-30 134.4 193 39.4
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 9.4e-30 134.4 190 40.5
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 1.2e-29 134.0 188 39.4
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.6e-29 133.7 182 42.3
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.6e-29 133.7 184 41.3
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 2.7e-29 132.9 195 40.5
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 8.0e-29 131.3 192 38.5
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 8.0e-29 131.3 194 40.7
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 8.0e-29 131.3 188 39.9
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 1.0e-28 131.0 188 39.9
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 1.4e-28 130.6 184 39.7
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.8e-28 130.2 183 38.8
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 2.3e-28 129.8 191 37.7
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 2.3e-28 129.8 194 40.2
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 2.3e-28 129.8 182 41.2
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 2.3e-28 129.8 185 40.0
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 3.0e-28 129.4 171 43.3
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 3.0e-28 129.4 195 38.5
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 4.0e-28 129.0 186 39.2
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 4.0e-28 129.0 184 42.4
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 5.2e-28 128.6 171 43.3
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 6.7e-28 128.3 179 40.2
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 6.7e-28 128.3 195 39.5
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 8.8e-28 127.9 195 40.5
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 2.6e-27 126.3 187 41.2
Migut.N01608 Erythranthe guttata HOM05D003531 ORTHO05D004354 2.6e-27 126.3 192 36.5
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 3.3e-27 125.9 186 39.2
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 3.3e-27 125.9 183 37.7
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 7.5e-27 124.8 200 38.5
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 2.8e-26 122.9 200 38.5
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 2.8e-26 122.9 188 38.3
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 4.8e-26 122.1 171 40.9
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 4.8e-26 122.1 177 42.9
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 6.3e-26 121.7 184 38.0
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 8.2e-26 121.3 187 41.2
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.1e-25 120.9 187 41.2
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 1.4e-25 120.6 179 38.0
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 1.8e-25 120.2 177 37.9
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 2.4e-25 119.8 187 42.2
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.1e-25 119.4 177 37.9
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 7.0e-25 118.2 179 38.5
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.5e-24 115.9 187 36.4
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 3.5e-24 115.9 171 40.4
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 1.0e-23 114.4 191 36.6
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 1.3e-23 114.0 204 37.7
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 1.7e-23 113.6 195 37.4
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.7e-23 113.6 178 36.0
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 2.2e-23 113.2 187 38.5
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 2.2e-23 113.2 188 36.7
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 3.8e-23 112.5 170 38.8
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 5.0e-23 112.1 187 36.4
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 6.5e-23 111.7 201 33.8
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.1e-22 110.9 176 40.9
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 1.5e-22 110.5 171 36.3
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.5e-22 109.8 192 37.0
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 2.5e-22 109.8 182 35.2
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 2.5e-22 109.8 198 35.9
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 5.5e-22 108.6 185 36.8
MBI02_g23150_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 7.2e-22 108.2 174 39.7
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 9.4e-22 107.8 182 40.1
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 1.2e-21 107.5 190 37.4
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 2.1e-21 106.7 216 34.7
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 3.6e-21 105.9 174 37.4
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 6.1e-21 105.1 207 34.3
Aqoxy2G00168 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 8.0e-21 104.8 205 35.6
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.4e-20 104.0 182 35.7
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.4e-20 104.0 181 34.3
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 1.4e-20 104.0 184 34.8
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.8e-20 103.6 105 49.5
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 2.3e-20 103.2 187 34.8
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 3.0e-20 102.8 184 34.8
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 4.0e-20 102.4 184 35.9
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 8.8e-20 101.3 168 38.7
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 8.8e-20 101.3 183 35.5
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 1.2e-19 100.9 170 36.5
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 1.2e-19 100.9 189 35.4
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 1.2e-19 100.9 188 34.6
BcaC06g36048 Brassica carinata HOM05D003531 ORTHO05D004354 1.5e-19 100.5 119 45.4
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 2.0e-19 100.1 179 38.5
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 2.0e-19 100.1 181 37.0
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 2.6e-19 99.8 110 47.3
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 3.4e-19 99.4 179 38.5
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 3.4e-19 99.4 91 52.7
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 3.4e-19 99.4 205 32.2
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 4.4e-19 99.0 178 33.1
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 7.5e-19 98.2 134 42.5
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 7.5e-19 98.2 183 37.2
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 9.8e-19 97.8 212 31.6
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 9.8e-19 97.8 187 36.4
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 9.8e-19 97.8 187 34.2
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 1.3e-18 97.4 204 31.9
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 1.3e-18 97.4 187 34.2
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 2.8e-18 96.3 188 36.7
C03p53830 Brassica napus HOM05D000305 ORTHO05D000065 3.7e-18 95.9 118 44.1
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 3.7e-18 95.9 87 55.2
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 3.7e-18 95.9 179 37.4
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 3.7e-18 95.9 179 37.4
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.7e-18 95.9 86 51.2
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 6.3e-18 95.1 173 35.8
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 8.3e-18 94.7 182 35.2
BolC2t10232H Brassica oleracea HOM05D003531 ORTHO05D004354 1.1e-17 94.4 57 68.4
C02p42000 Brassica napus HOM05D003531 ORTHO05D004354 1.4e-17 94.0 57 68.4
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 1.4e-17 94.0 187 33.7
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 1.8e-17 93.6 126 40.5
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 7.0e-17 91.7 62 62.9
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 5.9e-16 88.6 216 33.3
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 7.7e-16 88.2 65 58.5
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 1.7e-15 87.0 57 61.4
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.8e-15 85.9 59 62.7
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.1e-14 84.3 237 30.8
BcaC03g16378 Brassica carinata HOM05D003531 ORTHO05D004354 7.2e-14 81.6 134 39.6
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 5.2e-12 75.5 58 46.6
BcaC01g03307 Brassica carinata HOM05D000305 ORTHO05D000065 8.8e-12 74.7 110 40.0
C06p37170 Brassica napus HOM05D003531 ORTHO05D004354 5.7e-11 72.0 46 67.4
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 6.3e-10 68.6 217 29.0
AagrBONN_evm.TU.Sc2ySwM_344.3832 Anthoceros agrestis HOM05D003531 ORTHO05D004354 1.1e-09 67.8 54 51.9
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 1.4e-09 67.4 159 34.0
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 3.3e-06 56.2 31 83.9


User provided reference genes

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