Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 3.8e-76 288.1 146 100.0
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 3.9e-65 251.5 146 89.0
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 3.4e-61 238.4 146 84.2
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 7.6e-61 237.3 146 85.6
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 9.9e-61 236.9 146 84.9
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 6.4e-60 234.2 146 86.3
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.4e-59 233.0 146 84.9
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 1.9e-59 232.6 146 84.2
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.9e-59 232.6 146 85.6
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.9e-59 232.6 146 85.6
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.9e-59 232.6 146 85.6
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 2.4e-59 232.3 146 85.6
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 7.1e-59 230.7 146 84.9
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 1.0e-49 200.3 184 62.5
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 2.5e-43 179.1 144 65.3
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 2.1e-34 149.4 150 55.3
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 7.2e-27 124.4 139 49.6
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 2.7e-26 122.5 149 49.7
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.0e-25 120.6 139 49.6
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.0e-25 120.6 139 48.9
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 1.0e-25 120.6 139 48.9
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 3.9e-25 118.6 139 48.2
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 5.1e-25 118.2 135 51.1
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 2.0e-24 116.3 80 71.2
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 4.4e-24 115.2 135 46.7
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.7e-23 113.2 81 69.1
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 2.2e-23 112.8 83 65.1
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 3.7e-23 112.1 78 69.2
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 4.8e-23 111.7 100 56.0
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 8.2e-23 110.9 73 71.2
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 1.1e-22 110.5 78 67.9
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.4e-22 110.2 73 71.2
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.4e-22 110.2 73 71.2
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.8e-22 109.8 73 71.2
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.8e-22 109.8 73 71.2
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.4e-22 109.4 79 68.4
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.4e-22 109.4 79 68.4
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.4e-22 109.4 84 63.1
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 3.1e-22 109.0 73 69.9
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 3.1e-22 109.0 79 65.8
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 5.3e-22 108.2 73 69.9
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 5.3e-22 108.2 66 71.2
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 7.0e-22 107.8 70 67.1
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 9.1e-22 107.5 70 65.7
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 9.1e-22 107.5 70 67.1
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 9.1e-22 107.5 70 67.1
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 1.2e-21 107.1 137 46.7
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.2e-21 107.1 73 68.5
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.5e-21 106.7 73 68.5
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.5e-21 106.7 83 61.4
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 2.0e-21 106.3 79 69.6
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.6e-21 105.9 96 53.1
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 2.6e-21 105.9 107 55.1
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 3.4e-21 105.5 78 62.8
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 4.5e-21 105.1 79 68.4
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.5e-21 105.1 62 74.2
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.5e-21 105.1 62 74.2
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 5.9e-21 104.8 79 68.4
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.3e-20 103.6 115 47.0
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.3e-20 103.6 75 66.7
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 1.3e-20 103.6 62 72.6
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 1.3e-20 103.6 62 72.6
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.3e-20 103.6 62 72.6
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 2.2e-20 102.8 66 72.7
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.9e-20 102.4 75 64.0
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.1e-19 100.5 96 51.0
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.4e-19 100.1 70 62.9
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.4e-19 100.1 70 62.9
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.4e-19 100.1 70 62.9
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.4e-19 100.1 70 62.9
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.9e-19 99.8 70 62.9
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 3.2e-19 99.0 84 58.3
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 5.5e-19 98.2 70 65.7
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 9.4e-19 97.4 78 59.0
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.7e-18 95.9 70 60.0
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.0e-17 94.0 65 63.1
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.5e-16 90.1 70 58.6
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 9.7e-16 87.4 59 72.9
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 9.7e-16 87.4 59 72.9
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 9.7e-16 87.4 59 72.9
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 9.7e-16 87.4 59 72.9
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.7e-15 86.7 55 70.9
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 2.2e-15 86.3 65 60.0
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-15 86.3 65 60.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.7e-15 85.5 58 69.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 3.7e-15 85.5 58 69.0
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 3.7e-15 85.5 58 69.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.7e-15 85.5 58 69.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 3.7e-15 85.5 58 69.0
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 3.7e-15 85.5 77 57.1
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.7e-15 85.5 89 49.4
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 6.3e-15 84.7 62 61.3
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 2.4e-14 82.8 58 67.2
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 5.3e-14 81.6 51 70.6
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 2.0e-13 79.7 60 60.0
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 5.9e-13 78.2 73 52.1
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.7e-13 77.8 70 54.3
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.0e-12 77.4 82 47.6
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.3e-12 77.0 76 55.3
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-12 75.9 59 59.3
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 5.5e-11 71.6 52 57.7
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 8.0e-10 67.8 134 38.1
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.4e-09 67.0 55 52.7
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.8e-09 66.6 49 57.1
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.8e-09 66.6 49 57.1
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.2e-09 65.1 51 58.8
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.2e-08 63.9 72 47.2
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 4.4e-08 62.0 41 65.9
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.7e-07 58.9 35 71.4
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.7e-07 58.9 35 71.4
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.7e-07 58.9 35 71.4
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 8.2e-07 57.8 37 64.9
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.8e-06 56.6 72 43.1
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.8e-06 56.6 60 45.0
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.8e-06 56.6 60 45.0
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.1e-06 55.5 39 66.7
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.1e-06 55.5 39 66.7
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 4.1e-06 55.5 72 41.7
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 9.1e-06 54.3 40 60.0


User provided reference genes

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