Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23297 Brassica carinata HOM05D003172 ORTHO05D003708 4.7e-183 644.4 332 100.0
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 2.1e-98 363.2 494 49.4
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 1.8e-94 350.1 494 47.4
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 4.2e-91 339.0 494 47.4
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 3.6e-90 335.9 494 46.8
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 6.1e-90 335.1 458 48.5
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 1.0e-89 334.3 494 46.6
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 1.0e-89 334.3 494 46.6
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 1.8e-89 333.6 493 46.2
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 6.7e-89 331.6 463 47.9
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 1.1e-88 330.9 651 39.8
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 3.3e-88 329.3 469 47.3
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 5.7e-88 328.6 497 46.5
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 9.7e-88 327.8 460 48.0
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 4.1e-86 322.4 477 45.7
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 2.6e-85 319.7 497 46.1
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 2.9e-84 316.2 497 45.3
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 2.5e-83 313.2 501 44.3
BcaNung04946 Brassica carinata HOM05D003172 ORTHO05D003708 1.7e-76 290.4 244 67.2
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 6.8e-73 278.5 496 41.1
BcaC03g13584 Brassica carinata HOM05D003172 ORTHO05D003708 1.9e-67 260.4 463 43.4
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 3.0e-52 209.9 253 52.6
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 1.8e-49 200.7 247 51.4
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 1.5e-43 181.0 263 44.1
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 6.2e-42 175.6 267 44.6
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 6.2e-42 175.6 264 44.7
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.4e-41 174.5 272 43.8
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 5.2e-41 172.6 265 44.2
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 5.2e-41 172.6 267 43.4
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 6.8e-41 172.2 266 43.6
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.8e-41 172.2 266 43.6
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 1.2e-40 171.4 264 43.9
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 1.5e-40 171.0 265 45.3
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 5.8e-40 169.1 265 44.2
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 5.8e-40 169.1 267 43.8
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 5.8e-40 169.1 266 45.5
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 9.9e-40 168.3 268 42.9
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 9.9e-40 168.3 264 42.8
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 1.7e-39 167.5 265 44.2
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 1.7e-39 167.5 265 44.5
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 8.3e-39 165.2 263 43.7
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 3.2e-38 163.3 265 43.0
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 3.2e-38 163.3 266 43.6
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 4.1e-38 162.9 270 41.9
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 9.2e-38 161.8 263 42.6
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 1.6e-37 161.0 261 44.1
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 2.7e-37 160.2 265 43.0
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 4.6e-37 159.5 261 42.1
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 6.0e-37 159.1 261 41.8
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 7.8e-37 158.7 257 44.0
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 7.8e-37 158.7 264 42.4
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 1.0e-36 158.3 258 42.2
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 1.3e-36 157.9 258 40.7
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 2.3e-36 157.1 269 41.6
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 3.9e-36 156.4 266 42.1
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 5.1e-36 156.0 266 41.7
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 8.6e-36 155.2 258 43.0
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 8.6e-36 155.2 268 43.7
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 1.1e-35 154.8 265 39.2
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 1.5e-35 154.5 265 39.2
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 1.5e-35 154.5 265 38.9
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 1.9e-35 154.1 264 39.4
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 2.5e-35 153.7 265 38.9
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 4.3e-35 152.9 265 38.9
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 7.3e-35 152.1 263 42.2
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 9.5e-35 151.8 264 39.4
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-34 151.4 264 40.9
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-34 151.4 263 41.8
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 1.2e-34 151.4 264 37.9
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 1.2e-34 151.4 264 42.4
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 1.2e-34 151.4 262 42.4
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 2.8e-34 150.2 255 41.6
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 2.8e-34 150.2 260 42.3
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 3.6e-34 149.8 264 40.9
Nn2g15889 Nelumbo nucifera HOM05D003172 ORTHO05D003708 3.6e-34 149.8 308 40.3
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 4.7e-34 149.4 261 40.2
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 4.7e-34 149.4 264 41.7
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 4.7e-34 149.4 261 40.6
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 6.2e-34 149.1 260 40.4
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 8.1e-34 148.7 265 41.1
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 8.1e-34 148.7 265 42.3
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 1.1e-33 148.3 266 41.4
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 1.1e-33 148.3 260 40.8
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 1.4e-33 147.9 265 40.8
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 1.8e-33 147.5 264 37.5
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 3.1e-33 146.7 264 40.9
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 4.0e-33 146.4 262 38.9
C02p09760 Brassica napus HOM05D003172 ORTHO05D003708 6.8e-33 145.6 217 47.9
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 6.8e-33 145.6 270 40.0
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 8.9e-33 145.2 265 40.0
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 1.2e-32 144.8 263 40.3
Actinidia30565 Actinidia chinensis HOM05D003172 ORTHO05D003708 1.5e-32 144.4 267 40.8
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 1.5e-32 144.4 264 40.5
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 2.0e-32 144.1 259 40.9
Lj5g0018859 Lotus japonicus HOM05D003172 ORTHO05D003708 2.6e-32 143.7 266 38.3
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 2.6e-32 143.7 260 38.5
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 2.6e-32 143.7 262 38.5
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 3.4e-32 143.3 262 39.3
Ah.04g153270 Amaranthus hybridus HOM05D003172 ORTHO05D003708 4.4e-32 142.9 256 41.0
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 4.4e-32 142.9 297 37.7
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 5.8e-32 142.5 263 41.1
Oeu035612.2 Olea europaea HOM05D003172 ORTHO05D003708 7.6e-32 142.1 266 38.0
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 9.9e-32 141.7 256 41.4
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 1.7e-31 141.0 256 40.2
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.9e-31 140.2 256 38.3
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 4.9e-31 139.4 244 41.0
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 8.4e-31 138.7 258 38.8
BolC2t06884H Brassica oleracea HOM05D003172 ORTHO05D003708 4.2e-30 136.3 346 37.3
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 4.2e-30 136.3 265 38.1
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 4.2e-30 136.3 266 38.3
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 5.4e-30 136.0 257 37.7
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 5.4e-30 136.0 257 37.7
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 7.1e-30 135.6 265 38.9
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.7e-29 133.7 265 39.6
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 6.0e-29 132.5 261 37.9
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 7.8e-29 132.1 260 40.4
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 2.3e-28 130.6 261 37.9
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 2.3e-28 130.6 223 41.3
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 5.1e-28 129.4 266 37.2
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 1.9e-27 127.5 259 40.2
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 1.9e-27 127.5 254 38.2
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 7.3e-27 125.6 266 37.6
A02p04790 Brassica napus HOM05D003172 ORTHO05D003708 1.2e-26 124.8 66 90.9
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 2.1e-26 124.0 225 38.7
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 4.7e-26 122.9 266 39.1
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 4.7e-26 122.9 266 37.6
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 8.1e-26 122.1 228 39.5
THA.LOC104805751 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 3.1e-25 120.2 247 37.2
THA.LOC104805989 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 4.0e-25 119.8 247 37.2
Cpa.g.sc51.92 Carica papaya HOM05D003172 ORTHO05D003708 5.3e-25 119.4 134 48.5
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 9.0e-25 118.6 264 37.9
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 1.2e-24 118.2 255 35.7
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 1.2e-24 118.2 247 34.4
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 2.6e-24 117.1 253 37.9
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 4.4e-24 116.3 290 34.1
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 7.6e-24 115.5 264 37.1
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 1.7e-23 114.4 245 36.7
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 8.4e-23 112.1 390 29.2
A02p04800 Brassica napus HOM05D003172 ORTHO05D003708 3.2e-22 110.2 119 58.8
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.0e-20 105.1 66 72.7
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 1.3e-20 104.8 346 29.2
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 2.3e-20 104.0 262 36.6
Oeu062136.1 Olea europaea HOM05D003172 ORTHO05D003708 3.0e-20 103.6 63 76.2
vmacro12578 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 3.9e-20 103.2 177 38.4
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 5.1e-20 102.8 256 32.8
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 6.6e-20 102.4 73 65.8
ATR0559G169 Amborella trichopoda HOM05D003172 ORTHO05D003708 1.9e-19 100.9 262 35.9
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.3e-18 98.2 397 30.2
A03p08740 Brassica napus HOM05D003172 ORTHO05D003708 2.8e-18 97.1 127 52.8
Sabra13G0053000 Salix brachista HOM05D003172 ORTHO05D003708 1.8e-17 94.4 66 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2336 Anthoceros agrestis HOM05D003172 ORTHO05D003708 1.1e-14 85.1 240 33.3
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 9.3e-14 82.0 66 60.6
unitig_736.g22311 Utricularia gibba HOM05D003172 ORTHO05D003708 2.7e-13 80.5 339 28.6
CARHR217110 Cardamine hirsuta HOM05D003172 ORTHO05D003708 2.3e-12 77.4 226 32.3
SEGI_16964 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 2.3e-12 77.4 150 36.0
SHI23389 Sapria himalayana HOM05D003172 ORTHO05D003708 3.9e-12 76.6 217 30.9
HPP92_012145 Vanilla planifolia HOM05D003172 ORTHO05D003708 1.1e-11 75.1 245 29.4
Mapoly0036s0115 Marchantia polymorpha HOM05D003172 ORTHO05D003708 9.6e-11 72.0 63 57.1
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 1.6e-10 71.2 305 31.5
SMO115G0330 Selaginella moellendorffii HOM05D003172 ORTHO05D003708 8.1e-10 68.9 67 55.2
Migut.K00001 Erythranthe guttata HOM05D003172 ORTHO05D003708 1.1e-09 68.6 472 27.8
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 1.1e-09 68.6 305 29.8
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 4.0e-09 66.6 199 30.2
BcaNung04945 Brassica carinata HOM05D003172 ORTHO05D003708 1.3e-07 61.6 126 42.9
AL6G29450 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
BcaNung07324 Brassica carinata HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
CARHR217100 Cardamine hirsuta HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
HanXRQChr09g0245801 Helianthus annuus HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
HanXRQChr14g0438971 Helianthus annuus HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
Nitab4.5_0000001g0360 Nicotiana tabacum HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
SEGI_39352 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
THA.LOC104801500 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.5e-06 57.4 27 100.0
CBR_g17178 Chara braunii HOM05D003172 ORTHO05D003708 3.2e-06 57.0 27 96.3
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 3.2e-06 57.0 63 54.0


User provided reference genes

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