Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1369.4 674 100.0
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1333.2 676 97.0
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 0.0e+00 1332.4 675 97.0
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1330.5 676 96.7
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1330.1 675 96.9
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 0.0e+00 1328.5 676 96.7
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 0.0e+00 1291.6 674 93.8
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 0.0e+00 1285.4 676 93.9
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 0.0e+00 1279.6 676 92.9
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 0.0e+00 1277.7 679 92.8
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 0.0e+00 1271.9 676 91.9
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 0.0e+00 1219.1 674 89.5
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 0.0e+00 1174.8 679 84.5
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 0.0e+00 1139.4 671 82.3
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 3.4e-289 998.0 678 74.0
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 2.2e-288 995.3 681 73.3
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 3.2e-287 991.5 681 72.1
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 2.1e-286 988.8 680 73.8
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.3e-285 986.1 621 76.8
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 4.0e-282 974.5 667 72.7
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 4.4e-281 971.1 665 72.3
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 7.6e-281 970.3 639 73.9
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 1.1e-279 966.5 627 74.5
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 4.2e-279 964.5 678 70.9
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 9.3e-279 963.4 678 71.1
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 4.6e-278 961.1 680 71.5
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 3.9e-277 958.0 675 70.5
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 3.9e-277 958.0 684 70.8
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 4.3e-276 954.5 679 71.6
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 4.5e-273 944.5 682 70.2
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 1.7e-272 942.6 667 70.3
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 1.8e-269 932.6 677 70.0
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 3.9e-269 931.4 682 68.8
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 3.9e-269 931.4 677 69.3
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 6.7e-269 930.6 626 73.2
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 3.3e-268 928.3 669 68.8
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 4.3e-268 927.9 628 72.9
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 7.4e-268 927.2 680 69.9
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 2.1e-267 925.6 674 68.7
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 2.8e-267 925.2 669 68.3
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.8e-266 922.5 669 68.5
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 2.4e-266 922.2 682 69.6
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.4e-266 922.2 620 72.7
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 3.1e-266 921.8 671 68.6
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 4.0e-266 921.4 681 69.5
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 4.0e-266 921.4 625 72.2
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 5.3e-266 921.0 614 73.0
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 2.0e-265 919.1 687 66.8
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.4e-265 918.3 619 72.4
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 3.4e-265 918.3 675 70.4
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 1.7e-264 916.0 674 68.0
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 3.8e-264 914.8 680 68.4
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 4.9e-264 914.4 674 68.7
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 1.1e-263 913.3 673 68.9
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 5.5e-263 911.0 608 72.2
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 9.3e-263 910.2 608 71.7
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.6e-262 909.4 616 71.4
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 1.6e-262 909.4 680 66.6
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 4.6e-262 907.9 673 69.4
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 7.9e-262 907.1 626 71.1
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 2.5e-260 902.1 672 69.8
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 7.4e-260 900.6 680 68.5
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 1.4e-258 896.3 628 72.0
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 4.0e-258 894.8 663 69.5
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 6.9e-258 894.0 628 69.9
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 6.9e-258 894.0 628 72.0
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 9.0e-258 893.6 616 70.9
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 9.0e-258 893.6 628 72.0
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.5e-257 892.9 670 68.1
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 1.3e-256 889.8 644 67.5
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 3.2e-255 885.2 689 64.7
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 4.2e-255 884.8 614 70.5
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 7.1e-255 884.0 682 66.0
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 7.9e-254 880.6 635 67.7
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 1.3e-253 879.8 673 67.6
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 3.3e-252 875.2 667 67.2
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 3.3e-252 875.2 641 69.3
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 1.6e-251 872.8 684 65.9
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 2.9e-248 862.1 660 64.8
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 2.4e-242 842.4 624 66.2
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 5.0e-240 834.7 628 66.7
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 3.7e-235 818.5 632 66.0
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 2.0e-228 796.2 656 63.7
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 2.6e-228 795.8 553 72.2
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 1.7e-227 793.1 798 55.0
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.4e-226 789.3 621 62.3
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 9.1e-226 787.3 554 72.2
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.2e-225 786.9 646 62.1
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 4.5e-225 785.0 554 71.7
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 9.4e-223 777.3 553 69.3
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.3e-221 772.7 774 55.3
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 1.0e-213 747.3 668 60.0
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.4e-210 736.9 597 64.8
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 2.9e-195 686.0 581 58.5
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 7.8e-193 677.9 462 72.7
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 7.8e-185 651.4 785 49.0
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 1.4e-162 577.4 431 65.7
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 2.4e-141 506.9 459 56.2
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 2.8e-134 483.4 376 65.7
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.7e-123 447.6 531 47.3
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 5.9e-116 422.5 558 44.4
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 2.7e-105 387.1 284 68.0
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 3.6e-105 386.7 343 59.2
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 8.0e-97 359.0 326 58.9
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 8.0e-97 359.0 326 58.9
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 7.5e-95 352.4 294 61.6
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 5.4e-85 319.7 561 37.3
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 2.0e-76 291.2 241 58.5
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 2.8e-73 280.8 235 62.6
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 2.1e-60 238.0 567 30.5
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.7e-52 211.1 244 52.9
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.3e-51 208.8 256 45.3
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 3.4e-39 167.5 184 48.9
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 1.8e-32 145.2 142 52.8
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 2.4e-32 144.8 124 55.6
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.0e-32 142.9 138 55.1
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 1.1e-08 66.2 120 35.8


User provided reference genes

Program Settings