Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22996 Brassica carinata HOM05D001321 ORTHO05D005090 1.2e-32 142.5 68 100.0
Aa31LG1G18530 Aethionema arabicum HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Aa31LG4G17250 Aethionema arabicum HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
AL5G28110 Arabidopsis lyrata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
AL8G40570 Arabidopsis lyrata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
AT3G48680 Arabidopsis thaliana HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
AT5G63510 Arabidopsis thaliana HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaB02g09755 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaB04g19922 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaB07g29690 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaC01g06929 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaC03g18209 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaC04g23334 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BcaC07g39350 Brassica carinata HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
A06p19030 Brassica napus HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
A06p30140 Brassica napus HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
A09p08300 Brassica napus HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
C03p62930 Brassica napus HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
C08p23680 Brassica napus HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
C09p09380 Brassica napus HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BolC3t18547H Brassica oleracea HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BolC8t49998H Brassica oleracea HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BolC9t53850H Brassica oleracea HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BraA06t24986Z Brassica rapa HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BraA06t25965Z Brassica rapa HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
BraA09t36480Z Brassica rapa HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Carub.0005s1482 Capsella rubella HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Carub.0008s2421 Capsella rubella HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
CARHR277360 Cardamine hirsuta HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Thhalv10004812m.g Eutrema salsugineum HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Thhalv10010651m.g Eutrema salsugineum HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Sp2g26590 Schrenkiella parvula HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
Sp5g13330 Schrenkiella parvula HOM05D001321 ORTHO05D005090 3.7e-10 67.8 43 79.1
THA.LOC104798942 Tarenaya hassleriana HOM05D001321 ORTHO05D005090 1.1e-09 66.2 43 76.7
BcaB01g00789 Brassica carinata HOM05D001321 ORTHO05D005090 1.4e-09 65.9 43 76.7
CARHR157440 Cardamine hirsuta HOM05D001321 ORTHO05D005090 1.4e-09 65.9 43 76.7
Atru.chr10.1400 Acer truncatum HOM05D001321 ORTHO05D005090 5.9e-08 60.5 43 69.8
Atru.chr10.1409 Acer truncatum HOM05D001321 ORTHO05D005090 5.9e-08 60.5 43 69.8
Atru.chr6.1821 Acer truncatum HOM05D001321 ORTHO05D005090 5.9e-08 60.5 43 69.8
CSS0025908 Camellia sinensis var. sinensis HOM05D001321 ORTHO05D005090 7.7e-08 60.1 43 72.1
Hund10146 Selenicereus undatus HOM05D001321 ORTHO05D005090 7.7e-08 60.1 43 72.1
Cpa.g.sc13.93 Carica papaya HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
Cfa018777 Carpinus fangiana HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
CiPaw.11G005700 Carya illinoinensis HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
ClCG06G018010 Citrullus lanatus HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
Ciclev10032492m.g Citrus clementina HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
Haze_07161 Corylus avellana HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
CsaV3_1G000460 Cucumis sativus L. HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
Eucgr.K02710 Eucalyptus grandis HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
Hma1.2p1_0014F.1_g009270 Hydrangea macrophylla HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
QL10p002591 Quercus lobata HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
Hund02450 Selenicereus undatus HOM05D001321 ORTHO05D005090 1.0e-07 59.7 43 69.8
ATR0626G207 Amborella trichopoda HOM05D001321 ORTHO05D005090 1.3e-07 59.3 43 69.8
Psat7g036400 Pisum sativum HOM05D001321 ORTHO05D005090 1.7e-07 58.9 43 67.4
Ah.02g114810 Amaranthus hybridus HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
Ah.11g045500 Amaranthus hybridus HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
MSTRG.11270 Avicennia marina HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
EL10Ac5g11393 Beta vulgaris HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
DCAR_016383 Daucus carota HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
MBI07_g11279_MAGBIO Magnolia biondii HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
SGA_v2.0_scaffold40G15549 Striga asiatica HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
vmacro16729 Vaccinium macrocarpon HOM05D001321 ORTHO05D005090 2.3e-07 58.5 43 67.4
Lj5C95T4 Lonicera japonica HOM05D001321 ORTHO05D005090 2.9e-07 58.2 43 67.4
MD06G1140000 Malus domestica HOM05D001321 ORTHO05D005090 2.9e-07 58.2 43 67.4
MD14G1155400 Malus domestica HOM05D001321 ORTHO05D005090 2.9e-07 58.2 43 67.4
Prupe.5G149300 Prunus persica HOM05D001321 ORTHO05D005090 2.9e-07 58.2 43 67.4
TAR622G0784 Trochodendron aralioides HOM05D001321 ORTHO05D005090 2.9e-07 58.2 43 67.4
AUR62029587 Chenopodium quinoa HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
AUR62038855 Chenopodium quinoa HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Duzib205G0217 Durio zibethinus HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Gohir.A07G050200 Gossypium hirsutum HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Gohir.A12G190200 Gossypium hirsutum HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Gohir.D07G054600 Gossypium hirsutum HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Gorai.001G057800 Gossypium raimondii HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Manes.06G120700 Manihot esculenta HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Manes.14G049700 Manihot esculenta HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Rhsim12G0176300 Rhododendron simsii HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Thecc.03G131300 Theobroma cacao HOM05D001321 ORTHO05D005090 3.8e-07 57.8 43 67.4
Cc04_g09910 Coffea canephora HOM05D001321 ORTHO05D005090 5.0e-07 57.4 43 67.4
Migut.I00546 Erythranthe guttata HOM05D001321 ORTHO05D005090 5.0e-07 57.4 43 65.1
Potri.012G100400 Populus trichocarpa HOM05D001321 ORTHO05D005090 5.0e-07 57.4 43 67.4
PGR044G1915 Punica granatum HOM05D001321 ORTHO05D005090 5.0e-07 57.4 43 67.4
Sabra12G0059700 Salix brachista HOM05D001321 ORTHO05D005090 5.0e-07 57.4 43 65.1
Os02g0508000 Oryza sativa ssp. japonica HOM05D001321 ORTHO05D005090 6.6e-07 57.0 43 67.4
RcHm_v2.0_Chr7g0189861 Rosa chinensis HOM05D001321 ORTHO05D005090 6.6e-07 57.0 43 65.1
MSTRG.9332 Avicennia marina HOM05D001321 ORTHO05D005090 8.6e-07 56.6 43 65.1
Duzib084G1430 Durio zibethinus HOM05D001321 ORTHO05D005090 8.6e-07 56.6 43 67.4
Gohir.D12G192500 Gossypium hirsutum HOM05D001321 ORTHO05D005090 8.6e-07 56.6 43 65.1
Lj9C480T6 Lonicera japonica HOM05D001321 ORTHO05D005090 8.6e-07 56.6 43 67.4
PSO210G3877 Papaver somniferum HOM05D001321 ORTHO05D005090 8.6e-07 56.6 43 67.4
CANSAT80G0056 Cannabis sativa HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
CANSAT80G2765 Cannabis sativa HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
COL.COLO4_07123 Corchorus olitorius HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
Glyma.05G204300 Glycine max HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
Lalb_Chr07g0183511 Lupinus albus HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 62.8
Lalb_Chr12g0202261 Lupinus albus HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 62.8
Phvul.002G286100 Phaseolus vulgaris HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
TPR.G12817 Trifolium pratense HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 62.8
unitig_61.g26210 Utricularia gibba HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
VMungo0251G2091 Vigna mungo HOM05D001321 ORTHO05D005090 1.1e-06 56.2 43 65.1
FvH4_5g08540 Fragaria vesca HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 62.8
FAN04G1421 Fragaria x ananassa HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 62.8
FAN08G2661 Fragaria x ananassa HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 62.8
FAN13G3056 Fragaria x ananassa HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 62.8
FAN18G0520 Fragaria x ananassa HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 62.8
Lj4g0011684 Lotus japonicus HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 65.1
Nn3g16419 Nelumbo nucifera HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 65.1
TAR374G0437 Trochodendron aralioides HOM05D001321 ORTHO05D005090 1.5e-06 55.8 43 65.1
MELO3C026198.2 Cucumis melo HOM05D001321 ORTHO05D005090 1.9e-06 55.5 43 67.4
Gorai.008G207000 Gossypium raimondii HOM05D001321 ORTHO05D005090 1.9e-06 55.5 43 65.1
Medtr8g096820 Medicago truncatula HOM05D001321 ORTHO05D005090 1.9e-06 55.5 43 62.8
Sc10g0010510 Simmondsia chinensis HOM05D001321 ORTHO05D005090 1.9e-06 55.5 43 67.4
Dinv23163 Davidia involucrata HOM05D001321 ORTHO05D005090 2.5e-06 55.1 43 65.1
Glyma.08G011600 Glycine max HOM05D001321 ORTHO05D005090 2.5e-06 55.1 43 62.8
Lsat_1_v5_gn_4_81500 Lactuca sativa HOM05D001321 ORTHO05D005090 2.5e-06 55.1 43 62.8
Aqoxy5G03312 Aquilegia oxysepala HOM05D001321 ORTHO05D005090 3.3e-06 54.7 43 62.8
CiPaw.12G044400 Carya illinoinensis HOM05D001321 ORTHO05D005090 3.3e-06 54.7 43 65.1
HanXRQChr16g0498051 Helianthus annuus HOM05D001321 ORTHO05D005090 3.3e-06 54.7 43 60.5
Potri.015G098600 Populus trichocarpa HOM05D001321 ORTHO05D005090 3.3e-06 54.7 43 65.1
CAN.G861.3 Capsicum annuum HOM05D001321 ORTHO05D005090 4.2e-06 54.3 43 62.8
PSO832G0025 Papaver somniferum HOM05D001321 ORTHO05D005090 4.2e-06 54.3 43 62.8
Sed0021621 Sechium edule HOM05D001321 ORTHO05D005090 4.2e-06 54.3 43 62.8
TWI14G1281 Tripterygium wilfordii HOM05D001321 ORTHO05D005090 4.2e-06 54.3 43 60.5
Actinidia08884 Actinidia chinensis HOM05D001321 ORTHO05D005090 5.5e-06 53.9 44 61.4
Actinidia36820 Actinidia chinensis HOM05D001321 ORTHO05D005090 5.5e-06 53.9 44 61.4
arahy.Tifrunner.gnm1.ann1.F8ILKH Arachis hypogaea HOM05D001321 ORTHO05D005090 5.5e-06 53.9 43 60.5
arahy.Tifrunner.gnm1.ann1.P8MBQ4 Arachis hypogaea HOM05D001321 ORTHO05D005090 5.5e-06 53.9 43 60.5
Ca_17560_v3 Cicer arietinum L. HOM05D001321 ORTHO05D005090 5.5e-06 53.9 43 60.5
ECA232G3031 Erigeron canadensis HOM05D001321 ORTHO05D005090 5.5e-06 53.9 43 60.5
SalBow5G4576 Salvia bowleyana HOM05D001321 ORTHO05D005090 7.2e-06 53.5 43 62.8
Zm00001eb241770 Zea mays HOM05D001321 ORTHO05D005090 7.2e-06 53.5 43 62.8


User provided reference genes

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