Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001321', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001321' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001321' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001321' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001321' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001321', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001321' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001321' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001321' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001321' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001321', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001321' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001321' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001321' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001321' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001321', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001321' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001321', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' ) ), 'genes' => array( 'A02p42770' => 'bna', 'A02p44520' => 'bna', 'A05p21470' => 'bna', 'A06p15740' => 'bna', 'A06p19030' => 'bna', 'A06p30140' => 'bna', 'A07p17470' => 'bna', 'A08p05850' => 'bna', 'A08p05860' => 'bna', 'A08p29760' => 'bna', 'A09p08300' => 'bna', 'Aa31LG1G15030' => 'aar', 'Aa31LG1G18530' => 'aar', 'Aa31LG4G17250' => 'aar', 'Aa31LG7G4210' => 'aar', 'Aa31sc84G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1499' => 'aag', 'Actinidia08884' => 'ach', 'Actinidia19195' => 'ach', 'Actinidia19936' => 'ach', 'Actinidia35630' => 'ach', 'Actinidia36820' => 'ach', 'Ah.02g114810' => 'amhyb', 'Ah.02g125040' => 'amhyb', 'Ah.03g141060' => 'amhyb', 'Ah.11g045500' => 'amhyb', 'AL1G32310' => 'aly', 'AL1G56160' => 'aly', 'AL2G33380' => 'aly', 'AL5G28110' => 'aly', 'AL6G50360' => 'aly', 'AL7G15870' => 'aly', 'AL7G45440' => 'aly', 'AL8G40570' => 'aly', 'AL8G45020' => 'aly', 'Aqoxy5G01589' => 'aox', 'Aqoxy5G03312' => 'aox', 'Aqoxy6G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.51KVJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8ILKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQNM08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MBQ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR5LS8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXN8GE' => 'arhy', 'AT1G19580' => 'ath', 'AT1G47260' => 'ath', 'AT3G48680' => 'ath', 'AT5G63510' => 'ath', 'AT5G66510' => 'ath', 'ATR0568G082' => 'atr', 'ATR0626G207' => 'atr', 'Atru.chr10.1400' => 'acertr', 'Atru.chr10.1409' => 'acertr', 'Atru.chr13.443' => 'acertr', 'Atru.chr3.620' => 'acertr', 'Atru.chr6.1821' => 'acertr', 'AUR62004079' => 'cqu', 'AUR62004080' => 'cqu', 'AUR62007591' => 'cqu', 'AUR62007592' => 'cqu', 'AUR62029587' => 'cqu', 'AUR62034850' => 'cqu', 'AUR62038855' => 'cqu', 'BcaB01g00789' => 'bca', 'BcaB02g09755' => 'bca', 'BcaB02g10022' => 'bca', 'BcaB02g11386' => 'bca', 'BcaB03g12909' => 'bca', 'BcaB04g17539' => 'bca', 'BcaB04g19922' => 'bca', 'BcaB05g22996' => 'bca', 'BcaB07g29665' => 'bca', 'BcaB07g29690' => 'bca', 'BcaB07g31975' => 'bca', 'BcaB07g31977' => 'bca', 'BcaC01g06929' => 'bca', 'BcaC03g18209' => 'bca', 'BcaC03g18413' => 'bca', 'BcaC03g18419' => 'bca', 'BcaC04g23334' => 'bca', 'BcaC05g25832' => 'bca', 'BcaC05g25833' => 'bca', 'BcaC05g27632' => 'bca', 'BcaC06g34710' => 'bca', 'BcaC07g37229' => 'bca', 'BcaC07g39350' => 'bca', 'BolC2t12347H' => 'bol', 'BolC2t12551H' => 'bol', 'BolC3t18547H' => 'bol', 'BolC5t30514H' => 'bol', 'BolC5t32342H' => 'bol', 'BolC7t43063H' => 'bol', 'BolC8t47497H' => 'bol', 'BolC8t49575H' => 'bol', 'BolC8t49998H' => 'bol', 'BolC9t53850H' => 'bol', 'BraA02t09203Z' => 'bra', 'BraA02t09369Z' => 'bra', 'BraA05t21065Z' => 'bra', 'BraA06t24684Z' => 'bra', 'BraA06t24986Z' => 'bra', 'BraA06t25965Z' => 'bra', 'BraA07t29467Z' => 'bra', 'BraA08t32588Z' => 'bra', 'BraA08t34911Z' => 'bra', 'BraA09t36480Z' => 'bra', 'C02p62760' => 'bna', 'C02p64920' => 'bna', 'C03p62930' => 'bna', 'C05p18060' => 'bna', 'C05p36190' => 'bna', 'C07p25400' => 'bna', 'C08p06500' => 'bna', 'C08p19520' => 'bna', 'C08p23680' => 'bna', 'C09p09380' => 'bna', 'CAN.G1226.40' => 'can', 'CAN.G358.57' => 'can', 'CAN.G53.1' => 'can', 'CAN.G861.3' => 'can', 'CANSAT01G3158' => 'cansat', 'CANSAT80G0056' => 'cansat', 'CANSAT80G2765' => 'cansat', 'CARHR020130' => 'chi', 'CARHR036810' => 'chi', 'CARHR157440' => 'chi', 'CARHR277360' => 'chi', 'CARHR281240' => 'chi', 'Carub.0001s1913' => 'cru', 'Carub.0001s3603' => 'cru', 'Carub.0005s1482' => 'cru', 'Carub.0008s2421' => 'cru', 'Carub.0008s2802' => 'cru', 'Ca_15503_v3' => 'car', 'Ca_17560_v3' => 'car', 'Ca_24871_v3' => 'car', 'CBR_g370' => 'cbr', 'CBR_g49' => 'cbr', 'Cc04_g09910' => 'ccan', 'Cc07_g09790' => 'ccan', 'Cc10_g02640' => 'ccan', 'CDE01G0255' => 'cde', 'CDE01G0327' => 'cde', 'CDE02G1476' => 'cde', 'CDE02G1494' => 'cde', 'CDE08G1010' => 'cde', 'Cfa004336' => 'cfa', 'Cfa018179' => 'cfa', 'Cfa018777' => 'cfa', 'Ciclev10002155m.g' => 'ccl', 'Ciclev10026267m.g' => 'ccl', 'Ciclev10032492m.g' => 'ccl', 'CiPaw.02G019800' => 'cil', 'CiPaw.11G005700' => 'cil', 'CiPaw.12G044400' => 'cil', 'CiPaw.15G081400' => 'cil', 'CiPaw.16G060200' => 'cil', 'ClCG06G018010' => 'cla', 'ClCG08G014880' => 'cla', 'COL.COLO4_07123' => 'col', 'COL.COLO4_22045' => 'col', 'COL.COLO4_26282' => 'col', 'Cpa.g.c45133' => 'cpa', 'Cpa.g.sc123.48' => 'cpa', 'Cpa.g.sc13.93' => 'cpa', 'Cpa.g.sc6.143' => 'cpa', 'Cre06.g293850' => 'cre', 'Cre09.g415850' => 'cre', 'Cre12.g516450' => 'cre', 'CsaV3_1G000460' => 'csa', 'CsaV3_2G028880' => 'csa', 'CsaV3_4G005550' => 'csa', 'CSS0025908' => 'camsi', 'CSS0030294' => 'camsi', 'CSS0031338' => 'camsi', 'DCAR_016383' => 'dca', 'DCAR_016384' => 'dca', 'DCAR_017304' => 'dca', 'DCAR_022476' => 'dca', 'DCAR_025955' => 'dca', 'Dinv11188' => 'din', 'Dinv13500' => 'din', 'Dinv23163' => 'din', 'Dinv36103' => 'din', 'Dinv39437' => 'din', 'Dinv40004' => 'din', 'Duzib041G0789' => 'dzi', 'Duzib068G0128' => 'dzi', 'Duzib084G1430' => 'dzi', 'Duzib093G1077' => 'dzi', 'Duzib116G0676' => 'dzi', 'Duzib147G0901' => 'dzi', 'Duzib187G0265' => 'dzi', 'Duzib205G0217' => 'dzi', 'Duzib264G0075' => 'dzi', 'ECA232G3031' => 'eca', 'ECA232G4911' => 'eca', 'ECA246G0092' => 'eca', 'EL10Ac5g11393' => 'bvu', 'EL10Ac6g15534' => 'bvu', 'Eucgr.F01883' => 'egr', 'Eucgr.I02417' => 'egr', 'Eucgr.K02710' => 'egr', 'FAN04G1421' => 'fan', 'FAN08G2661' => 'fan', 'FAN13G3056' => 'fan', 'FAN15G2623' => 'fan', 'FAN18G0520' => 'fan', 'FAN19G1029' => 'fan', 'FAN20G1946' => 'fan', 'FAN23G1782' => 'fan', 'FAN23G2953' => 'fan', 'FAN26G0585' => 'fan', 'FAN26G1751' => 'fan', 'FAN27G3394' => 'fan', 'FAN28G1264' => 'fan', 'FAN28G2572' => 'fan', 'FvH4_1g12950' => 'fve', 'FvH4_1g12951' => 'fve', 'FvH4_1g12960' => 'fve', 'FvH4_1g13821' => 'fve', 'FvH4_1g13851' => 'fve', 'FvH4_2g39590' => 'fve', 'FvH4_5g08540' => 'fve', 'Glyma.01G172300' => 'gma', 'Glyma.04G030700' => 'gma', 'Glyma.04G030800' => 'gma', 'Glyma.05G204300' => 'gma', 'Glyma.06G030700' => 'gma', 'Glyma.08G011600' => 'gma', 'Glyma.11G070900' => 'gma', 'Gohir.A01G114700' => 'ghi', 'Gohir.A02G166800' => 'ghi', 'Gohir.A07G050200' => 'ghi', 'Gohir.A11G183200' => 'ghi', 'Gohir.A12G190200' => 'ghi', 'Gohir.D01G103100' => 'ghi', 'Gohir.D03G013200' => 'ghi', 'Gohir.D07G054600' => 'ghi', 'Gohir.D11G189700' => 'ghi', 'Gohir.D12G192500' => 'ghi', 'Gorai.001G057800' => 'gra', 'Gorai.002G126800' => 'gra', 'Gorai.003G013500' => 'gra', 'Gorai.007G201900' => 'gra', 'Gorai.008G207000' => 'gra', 'GSVIVG01009735001' => 'vvi', 'GSVIVG01018929001' => 'vvi', 'HanXRQChr09g0269011' => 'han', 'HanXRQChr15g0482281' => 'han', 'HanXRQChr16g0498051' => 'han', 'HanXRQChr16g0501531' => 'han', 'HanXRQChr16g0530641' => 'han', 'Haze_07161' => 'cav', 'Haze_17938' => 'cav', 'Hma1.2p1_0014F.1_g009270' => 'hma', 'HPP92_000047' => 'vpl', 'HPP92_008069' => 'vpl', 'Hund02450' => 'sun', 'Hund10146' => 'sun', 'Hund13993' => 'sun', 'Hund16443' => 'sun', 'Lalb_Chr05g0212701' => 'lal', 'Lalb_Chr07g0183511' => 'lal', 'Lalb_Chr08g0245921' => 'lal', 'Lalb_Chr12g0202261' => 'lal', 'Lalb_Chr16g0377731' => 'lal', 'Lalb_Chr23g0266551' => 'lal', 'Lj1g0023130' => 'lja', 'Lj2A456G49' => 'lonja', 'Lj2g0007709' => 'lja', 'Lj4A204T65' => 'lonja', 'Lj4A37T66' => 'lonja', 'Lj4g0011684' => 'lja', 'Lj4g0014476' => 'lja', 'Lj5C95T4' => 'lonja', 'Lj9C480T5' => 'lonja', 'Lj9C480T6' => 'lonja', 'Lsat_1_v5_gn_3_76001' => 'lsa', 'Lsat_1_v5_gn_4_81500' => 'lsa', 'Lsat_1_v5_gn_5_27781' => 'lsa', 'Manes.05G157600' => 'mes', 'Manes.06G120700' => 'mes', 'Manes.08G007100' => 'mes', 'Manes.14G049700' => 'mes', 'Manes.18G022700' => 'mes', 'Mapoly0005s0235' => 'mpo', 'Mapoly0036s0116' => 'mpo', 'MBI07_g11279_MAGBIO' => 'mbi', 'MBI16_g07723_MAGBIO' => 'mbi', 'MCO04G217' => 'mco', 'MCO13G049' => 'mco', 'MD02G1144100' => 'mdo', 'MD06G1140000' => 'mdo', 'MD08G1029100' => 'mdo', 'MD14G1155400' => 'mdo', 'MD15G1024600' => 'mdo', 'MD15G1257700' => 'mdo', 'Medtr1g022405' => 'mtr', 'Medtr3g112020' => 'mtr', 'Medtr5g020850' => 'mtr', 'Medtr8g096820' => 'mtr', 'MELO3C010958.2' => 'cme', 'MELO3C016394.2' => 'cme', 'MELO3C026198.2' => 'cme', 'Migut.H02532' => 'egut', 'Migut.I00546' => 'egut', 'Migut.J00609' => 'egut', 'MSTRG.11270' => 'ama', 'MSTRG.1267' => 'ama', 'MSTRG.23241' => 'ama', 'MSTRG.24283' => 'ama', 'MSTRG.9332' => 'ama', 'Nitab4.5_0000136g0280' => 'nta', 'Nitab4.5_0000178g0310' => 'nta', 'Nitab4.5_0003265g0140' => 'nta', 'Nitab4.5_0003367g0100' => 'nta', 'Nitab4.5_0007490g0020' => 'nta', 'Nitab4.5_0008031g0030' => 'nta', 'Nitab4.5_0009165g0020' => 'nta', 'Nitab4.5_0010179g0040' => 'nta', 'Nn1g04934' => 'nnu', 'Nn2g12278' => 'nnu', 'Nn3g16419' => 'nnu', 'Nn4g22278' => 'nnu', 'Oeu002829.2' => 'oeu', 'Oeu012313.1' => 'oeu', 'Oeu018214.1' => 'oeu', 'Oeu041358.1' => 'oeu', 'Oeu061145.1' => 'oeu', 'Os01g0283100' => 'osa', 'Os02g0508000' => 'osa', 'Os07g0642900' => 'osa', 'Os12g0169700' => 'osa', 'Peaxi162Scf00008g03415' => 'pax', 'Peaxi162Scf00089g00122' => 'pax', 'Peaxi162Scf00140g00015' => 'pax', 'Peaxi162Scf00366g00626' => 'pax', 'PGR031G3096' => 'pgr', 'PGR044G1915' => 'pgr', 'PGR083G1624' => 'pgr', 'PGSC0003DMG400003515' => 'stu', 'PGSC0003DMG400003692' => 'stu', 'PGSC0003DMG400015489' => 'stu', 'PGSC0003DMG402015205' => 'stu', 'Phvul.002G032600' => 'pvu', 'Phvul.002G286100' => 'pvu', 'Phvul.009G059200' => 'pvu', 'Phvul.009G059400' => 'pvu', 'Potri.002G034100' => 'ptr', 'Potri.005G120800' => 'ptr', 'Potri.005G229000' => 'ptr', 'Potri.012G100400' => 'ptr', 'Potri.015G098600' => 'ptr', 'Pp3c11_22520' => 'ppa', 'Pp3c1_7500' => 'ppa', 'Pp3c2_32980' => 'ppa', 'Pp3c4_16870' => 'ppa', 'Pp3c7_19540' => 'ppa', 'Pp3c7_4200' => 'ppa', 'PRCOL_00000018' => 'pco', 'PRCOL_00006549' => 'pco', 'Prupe.1G376900' => 'ppe', 'Prupe.5G149300' => 'ppe', 'Prupe.7G157500' => 'ppe', 'Psat2g157920' => 'psa', 'Psat5g016600' => 'psa', 'Psat6g008320' => 'psa', 'Psat7g036400' => 'psa', 'Psat7g190360' => 'psa', 'Psat7g190480' => 'psa', 'PSO210G3877' => 'pso', 'PSO541G3890' => 'pso', 'PSO675G3607' => 'pso', 'PSO731G0042' => 'pso', 'PSO764G0138' => 'pso', 'PSO832G0025' => 'pso', 'QL02p009240' => 'qlo', 'QL10p002591' => 'qlo', 'RcHm_v2.0_Chr2g0101001' => 'rch', 'RcHm_v2.0_Chr5g0071351' => 'rch', 'RcHm_v2.0_Chr6g0301331' => 'rch', 'RcHm_v2.0_Chr7g0189861' => 'rch', 'Rhsim08G0119000' => 'rsi', 'Rhsim08G0119100' => 'rsi', 'Rhsim12G0176300' => 'rsi', 'Sabra02G0027400' => 'sbr', 'Sabra05G0099600' => 'sbr', 'Sabra05G0176900' => 'sbr', 'Sabra12G0059700' => 'sbr', 'Sabra15G0119300' => 'sbr', 'SalBow5G4576' => 'sbo', 'SalBow7G2462' => 'sbo', 'SalBow8G5021' => 'sbo', 'Sc02g0005940' => 'sci', 'Sc07g0000820' => 'sci', 'Sc10g0010510' => 'sci', 'Sc15g0007060' => 'sci', 'Sed0007090' => 'sed', 'Sed0016105' => 'sed', 'Sed0020313' => 'sed', 'Sed0021621' => 'sed', 'SEGI_03681' => 'sgi', 'SEGI_10350' => 'sgi', 'SEGI_14578' => 'sgi', 'SEGI_16776' => 'sgi', 'SEGI_30737' => 'sgi', 'SGA_v2.0_scaffold11G05814' => 'sas', 'SGA_v2.0_scaffold12G06290' => 'sas', 'SGA_v2.0_scaffold12G06297' => 'sas', 'SGA_v2.0_scaffold201G41401' => 'sas', 'SGA_v2.0_scaffold40G15549' => 'sas', 'SGA_v2.0_scaffold51G18831' => 'sas', 'SHI08141' => 'shi', 'SMO118G0367' => 'smo', 'SMO367G1044' => 'smo', 'Solyc02g062600.3' => 'sly', 'Solyc02g085040.3' => 'sly', 'Solyc03g019720.4' => 'sly', 'Solyc04g080570.3' => 'sly', 'Sopen02g013620' => 'spe', 'Sopen02g029740' => 'spe', 'Sopen03g029900' => 'spe', 'Sopen04g009230' => 'spe', 'Sopen04g034160' => 'spe', 'Sp1g17430' => 'spa', 'Sp1g34390' => 'spa', 'Sp2g26590' => 'spa', 'Sp2g30220' => 'spa', 'Sp5g13330' => 'spa', 'TAR374G0437' => 'tar', 'TAR376G0683' => 'tar', 'TAR381G0318' => 'tar', 'TAR622G0784' => 'tar', 'TAR625G0384' => 'tar', 'TAR628G0516' => 'tar', 'THA.LOC104798942' => 'tha', 'THA.LOC104801917' => 'tha', 'THA.LOC104812560' => 'tha', 'THA.LOC104821297' => 'tha', 'Thecc.01G032100' => 'tca', 'Thecc.03G131300' => 'tca', 'Thecc.08G029900' => 'tca', 'Thhalv10004794m.g' => 'esa', 'Thhalv10004812m.g' => 'esa', 'Thhalv10008724m.g' => 'esa', 'Thhalv10010651m.g' => 'esa', 'Thhalv10011707m.g' => 'esa', 'TPR.G12817' => 'tpr', 'TPR.G20185' => 'tpr', 'TPR.G20501' => 'tpr', 'TPR.G21516' => 'tpr', 'TPR.G2371' => 'tpr', 'TPR.G8456' => 'tpr', 'TWI12G0008' => 'twi', 'TWI14G1281' => 'twi', 'TWI23G0950' => 'twi', 'TWI36G1345' => 'twi', 'TWI56G0613' => 'twi', 'unitig_0.g1084' => 'ugi', 'unitig_61.g26210' => 'ugi', 'unitig_748.g7752' => 'ugi', 'vmacro16729' => 'vma', 'vmacro17817' => 'vma', 'vmacro17818' => 'vma', 'VMungo0251G2091' => 'vmu', 'VMungo0464G0309' => 'vmu', 'VMungo1215G1391' => 'vmu', 'VMungo1215G1466' => 'vmu', 'VMungo1309G2002' => 'vmu', 'Zm00001eb129380' => 'zma', 'Zm00001eb180920' => 'zma', 'Zm00001eb241770' => 'zma', 'Zm00001eb329150' => 'zma', 'Zm00001eb332510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001321' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001321' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001321' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001321' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151