Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 6.6e-105 384.0 191 100.0
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 3.7e-92 341.7 174 97.7
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 3.0e-89 332.0 174 94.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 3.9e-89 331.6 174 94.8
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 3.9e-89 331.6 174 94.8
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 8.6e-89 330.5 174 94.8
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.6e-87 326.2 174 93.1
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 3.0e-81 305.4 177 87.0
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 1.9e-75 286.2 182 79.7
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 2.7e-74 282.3 173 83.2
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.2e-69 266.9 193 75.1
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.1e-67 260.4 179 76.5
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 6.0e-66 254.6 179 74.3
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 6.7e-65 251.1 200 68.0
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.5e-64 250.0 173 75.1
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.3e-57 226.9 190 61.6
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 3.9e-57 225.3 188 61.2
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.7e-57 224.2 190 61.1
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.1e-56 223.8 191 60.7
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.9e-56 223.0 190 60.5
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.3e-56 222.2 196 59.7
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 7.4e-56 221.1 190 60.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 9.6e-56 220.7 187 60.4
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.3e-55 220.3 190 62.1
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 2.1e-55 219.5 189 60.8
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.8e-55 219.2 187 61.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 2.8e-55 219.2 194 59.3
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 2.8e-55 219.2 191 61.3
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 6.2e-55 218.0 191 59.2
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.2e-55 218.0 188 60.6
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 8.1e-55 217.6 185 63.2
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.1e-55 217.6 190 59.5
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 8.1e-55 217.6 196 58.2
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 8.1e-55 217.6 189 60.8
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 8.1e-55 217.6 191 59.2
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.1e-54 217.2 192 58.3
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.1e-54 217.2 190 59.5
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.4e-54 216.9 187 59.9
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.4e-54 216.9 189 59.8
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.8e-54 216.5 190 58.9
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 2.4e-54 216.1 191 59.2
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 2.4e-54 216.1 191 60.2
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 4.0e-54 215.3 190 59.5
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 4.0e-54 215.3 190 59.5
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 4.0e-54 215.3 189 59.8
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 4.0e-54 215.3 192 58.9
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 5.3e-54 214.9 190 59.5
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 5.3e-54 214.9 190 58.9
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 5.3e-54 214.9 190 59.5
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 6.9e-54 214.5 188 61.2
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 6.9e-54 214.5 189 59.3
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 6.9e-54 214.5 192 58.9
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 9.0e-54 214.2 190 59.5
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.2e-53 213.8 187 60.4
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.0e-53 213.0 188 58.5
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 2.0e-53 213.0 189 58.7
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 4.5e-53 211.8 190 56.8
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.0e-52 210.7 193 58.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.3e-52 210.3 193 57.5
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.3e-52 210.3 189 56.6
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.3e-52 210.3 193 59.1
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 2.2e-52 209.5 176 63.6
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 6.5e-52 208.0 186 59.7
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 6.5e-52 208.0 175 62.9
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.9e-51 206.5 189 58.2
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 1.9e-51 206.5 207 54.6
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.5e-51 206.1 189 60.8
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.5e-51 206.1 204 54.9
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 3.2e-51 205.7 194 58.2
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.2e-51 205.3 188 56.9
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 5.5e-51 204.9 188 57.4
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 5.5e-51 204.9 188 57.4
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.1e-50 203.0 190 55.3
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 3.5e-50 202.2 193 54.4
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.5e-50 202.2 192 57.3
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 4.6e-50 201.8 190 56.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 6.0e-50 201.4 176 58.5
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 6.0e-50 201.4 193 54.9
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 7.9e-50 201.1 189 54.5
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 3.0e-49 199.1 191 57.1
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 3.0e-49 199.1 187 56.1
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 3.9e-49 198.7 192 56.8
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.9e-48 196.4 190 54.7
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 4.3e-48 195.3 190 54.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 3.7e-47 192.2 189 52.9
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 1.4e-46 190.3 190 52.1
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.4e-46 190.3 187 55.6
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.4e-46 190.3 174 57.5
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 3.8e-44 182.2 192 51.6
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.2e-42 177.2 177 52.0
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.6e-42 176.8 185 52.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.2e-39 164.5 174 50.6
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.1e-38 164.1 162 54.3
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 4.1e-38 162.2 165 55.2
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.0e-37 159.8 211 45.5
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 5.0e-36 155.2 134 58.2
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.9e-35 153.3 185 45.9
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 9.7e-32 141.0 138 55.8
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 4.8e-31 138.7 205 42.9
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 5.9e-29 131.7 211 39.8
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 2.5e-27 126.3 121 52.9
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 5.5e-27 125.2 68 85.3
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 4.7e-26 122.1 134 47.8
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 2.3e-25 119.8 188 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.4e-22 110.5 206 36.9
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.4e-22 110.5 180 39.4
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 5.9e-21 105.1 114 51.8
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 1.1e-19 100.9 57 84.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.1e-18 96.7 312 29.2
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 8.0e-18 94.7 181 34.3
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.7e-13 79.7 119 42.9
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 2.0e-08 63.5 132 34.1
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 5.4e-06 55.5 79 38.0


User provided reference genes

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