Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 4.7e-289 997.3 548 100.0
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 9.0e-224 780.4 586 78.8
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 7.7e-223 777.3 586 78.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 7.7e-223 777.3 586 78.8
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 8.8e-211 737.3 596 75.7
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.9e-181 639.8 613 65.9
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.6e-180 635.6 700 60.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 3.4e-170 602.4 684 58.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.9e-169 599.4 692 58.7
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-169 598.6 685 58.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.1e-168 597.4 643 58.6
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.3e-165 585.5 632 59.0
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.3e-163 579.7 661 57.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.4e-160 569.7 627 60.6
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-155 554.3 677 56.1
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.8e-146 521.9 606 55.9
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-145 518.8 653 54.7
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.3e-118 430.3 671 49.5
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.7e-110 402.1 594 50.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.1e-99 366.7 611 45.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-98 364.4 583 47.2
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 6.5e-97 359.0 580 46.6
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 4.2e-96 356.3 578 47.2
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.6e-95 354.4 580 45.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 3.0e-94 350.1 581 46.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.4e-91 341.3 706 41.5
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.3e-89 334.7 652 41.9
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-88 331.6 587 45.1
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 1.9e-88 330.9 724 41.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.2e-88 330.1 584 44.2
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.4e-85 319.7 516 46.1
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.8e-84 316.2 612 42.3
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.1e-83 313.2 777 37.6
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.7e-81 307.8 632 41.8
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 5.0e-81 306.2 570 43.5
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 8.8e-70 268.9 671 39.2
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 8.8e-70 268.9 671 39.2
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-68 264.6 671 39.0
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.8e-68 263.8 741 36.7
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 8.3e-68 262.3 626 40.3
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.0e-66 257.7 750 33.2
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.8e-62 242.7 712 34.4
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-56 224.9 648 37.5
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.4e-54 218.4 898 30.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.4e-51 208.4 602 36.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.4e-51 206.5 601 34.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.0e-46 190.3 601 33.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.2e-45 188.7 628 34.7
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 5.4e-43 179.9 581 35.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 4.7e-39 166.8 623 32.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.6e-37 161.0 347 38.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.8e-37 159.8 617 31.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.3e-36 158.7 359 36.5
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.9e-36 156.8 308 39.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.9e-36 156.8 567 32.6
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.9e-35 154.8 451 34.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 4.1e-35 153.7 576 35.6
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.2e-34 152.1 552 31.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.7e-34 151.0 415 35.2
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.0e-34 149.8 423 32.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.7e-33 148.3 424 34.0
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.1e-32 145.6 373 35.7
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.1e-32 145.6 595 31.4
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.2e-31 142.1 557 30.3
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.7e-31 140.2 624 30.4
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 8.1e-31 139.4 612 30.4
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 8.1e-31 139.4 356 34.8
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.4e-30 137.9 408 33.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.5e-29 135.2 592 29.7
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.6e-29 132.9 116 68.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.9e-28 130.2 517 32.1
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.9e-28 130.2 374 33.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 6.4e-28 129.8 327 32.4
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 8.4e-28 129.4 346 36.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.1e-27 129.0 501 31.5
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.2e-27 127.5 650 27.1
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.2e-27 127.5 594 31.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.5e-26 124.0 343 34.4
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 6.0e-26 123.2 471 31.0
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.8e-26 122.9 173 43.4
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.0e-25 122.5 151 48.3
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.3e-25 121.3 435 31.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.3e-25 121.3 372 32.5
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.6e-25 119.8 454 29.5
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.1e-24 119.0 560 29.5
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.3e-23 115.5 266 36.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-23 114.8 466 28.8
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.8e-22 111.7 168 48.8
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.8e-22 111.7 281 35.6
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 5.3e-22 110.2 358 32.7
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.3e-22 110.2 426 29.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.9e-22 109.8 687 26.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.2e-21 109.0 687 29.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.0e-21 108.2 270 36.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 4.5e-21 107.1 434 27.9
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.4e-20 103.2 460 28.9
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 3.2e-19 100.9 411 29.7
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.2e-18 99.0 527 26.8
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.7e-18 97.8 474 25.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.5e-18 97.4 543 26.9
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.0e-18 96.7 456 29.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 7.9e-18 96.3 453 27.4
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.0e-17 95.9 266 31.6
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.8e-17 95.1 367 31.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 3.0e-17 94.4 631 29.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.9e-17 94.0 190 40.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 8.7e-17 92.8 325 32.0
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.5e-16 92.0 87 58.6
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.9e-16 91.7 717 26.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.9e-16 91.7 295 32.9
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.9e-16 91.7 505 26.7
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.5e-16 91.3 578 26.1
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 4.3e-16 90.5 320 30.3
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.3e-16 90.5 565 26.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 4.3e-16 90.5 670 27.3
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 5.6e-16 90.1 521 25.7
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 5.6e-16 90.1 203 34.5
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 5.6e-16 90.1 446 28.7
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 9.6e-16 89.4 90 57.8
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 1.6e-15 88.6 79 62.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.1e-15 88.2 362 29.3
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.1e-15 88.2 557 27.3
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.8e-15 87.8 461 28.9
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.8e-15 87.8 90 56.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.8e-15 87.0 467 26.6
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 6.2e-15 86.7 79 60.8
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 6.2e-15 86.7 90 55.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 8.1e-15 86.3 145 42.1
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.8e-14 85.1 195 36.9
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 2.4e-14 84.7 79 60.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 4.0e-14 84.0 572 28.3
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.3e-14 83.6 620 24.0
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.0e-14 82.8 397 27.2
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 3.4e-13 80.9 278 31.7
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 4.5e-13 80.5 235 33.6
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 7.6e-13 79.7 442 26.2
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 9.9e-13 79.3 220 32.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.7e-12 78.6 290 30.3
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.9e-12 77.8 549 29.0
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.9e-12 77.8 607 25.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.9e-12 77.8 305 30.2
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 1.4e-11 75.5 108 42.6
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 4.2e-11 73.9 259 27.8
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 5.5e-11 73.6 305 26.9
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.3e-11 72.8 423 26.2
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.2e-10 72.4 544 26.5
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.6e-10 72.0 427 24.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-10 72.0 414 26.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.1e-10 71.6 426 23.5
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.7e-10 71.2 468 27.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.0e-09 67.8 298 27.9
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.9e-08 65.1 635 25.0
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.6e-08 63.5 203 34.0
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 9.6e-08 62.8 272 28.7
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 3.7e-07 60.8 274 29.9
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 3.7e-07 60.8 179 30.2
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 4.8e-07 60.5 242 31.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 8.1e-07 59.7 219 30.1
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.4e-06 58.9 224 33.0
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-06 58.2 234 30.3
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 3.1e-06 57.8 365 26.6
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 6.9e-06 56.6 206 28.2
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 9.0e-06 56.2 234 29.9


User provided reference genes

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